Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB1P09429 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGB1P09429 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB1P09429 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB1P09429 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
HMGB1P09429 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB1P09429 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGB1P09429 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGB1P09429 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC23.43■■□□□ 1.34
HMGB1P09429 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.43■■□□□ 1.34
HMGB1P09429 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.43■■□□□ 1.34
HMGB1P09429 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.43■■□□□ 1.34
HMGB1P09429 HES2-206ENST00000489730 730 ntTSL 2 BASIC23.43■■□□□ 1.34
HMGB1P09429 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.43■■□□□ 1.34
HMGB1P09429 AC098934.4-201ENST00000564127 592 ntBASIC23.43■■□□□ 1.34
HMGB1P09429 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.43■■□□□ 1.34
HMGB1P09429 AC060766.5-201ENST00000590539 871 ntBASIC23.43■■□□□ 1.34
HMGB1P09429 AC083880.1-201ENST00000608266 535 ntBASIC23.43■■□□□ 1.34
HMGB1P09429 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
HMGB1P09429 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
HMGB1P09429 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 AC092368.3-202ENST00000574180 1591 ntBASIC23.43■■□□□ 1.34
HMGB1P09429 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
HMGB1P09429 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC23.43■■□□□ 1.34
HMGB1P09429 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB1P09429 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC23.42■■□□□ 1.34
HMGB1P09429 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.42■■□□□ 1.34
HMGB1P09429 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.42■■□□□ 1.34
HMGB1P09429 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.42■■□□□ 1.34
HMGB1P09429 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.42■■□□□ 1.34
HMGB1P09429 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
HMGB1P09429 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC23.42■■□□□ 1.34
HMGB1P09429 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.42■■□□□ 1.34
HMGB1P09429 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.42■■□□□ 1.34
HMGB1P09429 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB1P09429 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.41■■□□□ 1.34
HMGB1P09429 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.41■■□□□ 1.34
HMGB1P09429 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
HMGB1P09429 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.41■■□□□ 1.34
HMGB1P09429 AC116351.2-201ENST00000606540 1585 ntBASIC23.41■■□□□ 1.34
HMGB1P09429 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB1P09429 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB1P09429 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB1P09429 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.41■■□□□ 1.34
HMGB1P09429 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
HMGB1P09429 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.41■■□□□ 1.34
HMGB1P09429 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB1P09429 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.41■■□□□ 1.34
HMGB1P09429 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.41■■□□□ 1.34
HMGB1P09429 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB1P09429 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB1P09429 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
HMGB1P09429 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
HMGB1P09429 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC23.4■■□□□ 1.34
HMGB1P09429 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.4■■□□□ 1.34
HMGB1P09429 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
HMGB1P09429 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.4■■□□□ 1.34
HMGB1P09429 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
HMGB1P09429 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.4■■□□□ 1.34
HMGB1P09429 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC23.4■■□□□ 1.34
HMGB1P09429 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.4■■□□□ 1.34
HMGB1P09429 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.4■■□□□ 1.34
HMGB1P09429 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
HMGB1P09429 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB1P09429 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC23.4■■□□□ 1.34
HMGB1P09429 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
HMGB1P09429 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
HMGB1P09429 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.39■■□□□ 1.34
HMGB1P09429 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
HMGB1P09429 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
HMGB1P09429 AC018553.1-201ENST00000616682 1458 ntBASIC23.39■■□□□ 1.34
HMGB1P09429 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HMGB1P09429 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HMGB1P09429 PNMA6B-201ENST00000538162 1200 ntBASIC23.39■■□□□ 1.33
HMGB1P09429 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.39■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms