Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF40O75150 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF40O75150 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF40O75150 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RNF40O75150 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF40O75150 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF40O75150 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF40O75150 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.33■■□□□ 1.01
RNF40O75150 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.33■■□□□ 1.01
RNF40O75150 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 AC026471.1-201ENST00000564629 3026 ntBASIC21.33■■□□□ 1.01
RNF40O75150 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
RNF40O75150 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
RNF40O75150 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.33■■□□□ 1.01
RNF40O75150 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.33■■□□□ 1.01
RNF40O75150 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF40O75150 AP006294.2-201ENST00000641667 209 ntBASIC21.33■■□□□ 1.01
RNF40O75150 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF40O75150 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.33■■□□□ 1
RNF40O75150 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF40O75150 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.33■■□□□ 1
RNF40O75150 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
RNF40O75150 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.33■■□□□ 1
RNF40O75150 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.32■■□□□ 1
RNF40O75150 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.32■■□□□ 1
RNF40O75150 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.32■■□□□ 1
RNF40O75150 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 AL158047.1-201ENST00000445918 881 ntBASIC21.32■■□□□ 1
RNF40O75150 AC128676.1-201ENST00000454392 318 ntBASIC21.32■■□□□ 1
RNF40O75150 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.32■■□□□ 1
RNF40O75150 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.32■■□□□ 1
RNF40O75150 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
RNF40O75150 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF40O75150 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RNF40O75150 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 AC003102.1-202ENST00000563394 1796 ntBASIC21.31■■□□□ 1
RNF40O75150 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.31■■□□□ 1
RNF40O75150 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.31■■□□□ 1
RNF40O75150 LSM12P1-201ENST00000411836 588 ntBASIC21.31■■□□□ 1
RNF40O75150 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.31■■□□□ 1
RNF40O75150 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
RNF40O75150 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.3■■□□□ 1
RNF40O75150 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.3■■□□□ 1
RNF40O75150 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.3■■□□□ 1
RNF40O75150 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RNF40O75150 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RNF40O75150 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.3■■□□□ 1
RNF40O75150 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.3■■□□□ 1
RNF40O75150 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.3■■□□□ 1
RNF40O75150 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
RNF40O75150 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.3■■□□□ 1
RNF40O75150 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.3■■□□□ 1
RNF40O75150 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.3■■□□□ 1
RNF40O75150 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.3■■□□□ 1
RNF40O75150 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.3■■□□□ 1
RNF40O75150 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.3■■□□□ 1
RNF40O75150 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF40O75150 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.3■■□□□ 1
RNF40O75150 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF40O75150 AC121338.2-201ENST00000622535 1744 ntBASIC21.29■■□□□ 1
RNF40O75150 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RNF40O75150 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RNF40O75150 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF40O75150 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms