Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SGCEO43556 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SGCEO43556 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.52■□□□□ 0.39
SGCEO43556 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.51■□□□□ 0.39
SGCEO43556 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SGCEO43556 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 MIPEPP3-201ENST00000412105 444 ntBASIC17.51■□□□□ 0.39
SGCEO43556 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 KRT8P20-201ENST00000423953 1409 ntBASIC17.51■□□□□ 0.39
SGCEO43556 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.51■□□□□ 0.39
SGCEO43556 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.51■□□□□ 0.39
SGCEO43556 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SGCEO43556 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SGCEO43556 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SGCEO43556 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.51■□□□□ 0.39
SGCEO43556 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SGCEO43556 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.5■□□□□ 0.39
SGCEO43556 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 HLA-G-202ENST00000376815 851 ntBASIC17.5■□□□□ 0.39
SGCEO43556 HLA-G-203ENST00000376818 1127 ntBASIC17.5■□□□□ 0.39
SGCEO43556 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.5■□□□□ 0.39
SGCEO43556 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SGCEO43556 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.5■□□□□ 0.39
SGCEO43556 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
SGCEO43556 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SGCEO43556 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.5■□□□□ 0.39
SGCEO43556 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.5■□□□□ 0.39
SGCEO43556 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SGCEO43556 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
SGCEO43556 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
SGCEO43556 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SGCEO43556 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SGCEO43556 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
SGCEO43556 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SGCEO43556 TSPY6P-201ENST00000448518 926 ntBASIC17.49■□□□□ 0.39
SGCEO43556 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.49■□□□□ 0.39
SGCEO43556 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 AL158211.5-201ENST00000623583 2518 ntBASIC17.49■□□□□ 0.39
SGCEO43556 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SGCEO43556 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
SGCEO43556 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.48■□□□□ 0.39
SGCEO43556 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.48■□□□□ 0.39
SGCEO43556 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 KRT16P6-202ENST00000425692 1426 ntBASIC17.48■□□□□ 0.39
SGCEO43556 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.48■□□□□ 0.39
SGCEO43556 AC023632.3-201ENST00000521633 145 ntBASIC17.48■□□□□ 0.39
SGCEO43556 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.48■□□□□ 0.39
SGCEO43556 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.48■□□□□ 0.39
SGCEO43556 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SGCEO43556 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SGCEO43556 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SGCEO43556 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.48■□□□□ 0.39
SGCEO43556 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.47■□□□□ 0.39
SGCEO43556 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms