Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 AC073912.3-201ENST00000624414 853 ntBASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV40A0A0B4J280 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 AL353807.1-201ENST00000427475 662 ntBASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 KRT16P6-202ENST00000425692 1426 ntBASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV40A0A0B4J280 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV40A0A0B4J280 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms