Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 CDV3P1-201ENST00000471403 739 ntBASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV1-2A0A0B4J238 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.27■□□□□ 0.35
TRAV1-2A0A0B4J238 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
TRAV1-2A0A0B4J238 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV1-2A0A0B4J238 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV1-2A0A0B4J238 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 MIR939-201ENST00000401314 82 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 AC091305.1-201ENST00000479476 895 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 SLC7A5P1-201ENST00000568957 537 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 KRT16P6-202ENST00000425692 1426 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 AC087633.2-202ENST00000565166 1439 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 LETM1P2-201ENST00000597330 2178 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 AC005082.1-201ENST00000413042 2259 ntBASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV1-2A0A0B4J238 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 PTBP1P-201ENST00000554374 1601 ntBASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 AC079598.2-202ENST00000546624 1451 ntBASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 KRT8P17-201ENST00000453110 1448 ntBASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 PBX2P1-201ENST00000493219 1291 ntBASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 AC104187.1-201ENST00000607510 612 ntBASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 AC106739.1-201ENST00000617035 715 ntBASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-2A0A0B4J238 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-2A0A0B4J238 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms