Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC063943.2-201ENST00000495697 534 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 RFPL4AP3-201ENST00000515267 345 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 RNU4-18P-201ENST00000516751 149 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 RBMS2P1-201ENST00000525031 1226 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 AC130366.1-201ENST00000526505 1192 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 MIR378H-201ENST00000579966 83 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 MIR5682-201ENST00000584864 76 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 MIR6883-201ENST00000614952 78 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 AC005753.1-201ENST00000623837 618 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 AC008626.2-201ENST00000624425 248 ntBASIC6.56□□□□□ -1.36
VMP1Q96GC9 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
VMP1Q96GC9 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
VMP1Q96GC9 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
VMP1Q96GC9 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
VMP1Q96GC9 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
VMP1Q96GC9 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
VMP1Q96GC9 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.56□□□□□ -1.36
VMP1Q96GC9 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AL353626.3-201ENST00000413399 657 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 DUTP4-201ENST00000424782 475 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 CHCHD3P1-201ENST00000425516 676 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 MYO5BP3-201ENST00000431872 1279 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC114402.2-201ENST00000432760 643 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 CYCSP51-201ENST00000443545 318 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 OR7E7P-201ENST00000455678 1012 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 AL354872.1-201ENST00000456361 967 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC026826.1-201ENST00000493002 361 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 RNU2-45P-201ENST00000516068 187 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 SSU72P6-201ENST00000532644 488 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 WDR45BP1-201ENST00000583470 1029 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 Z99289.1-201ENST00000585373 807 ntTSL 3 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC067852.5-201ENST00000589299 310 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC087821.1-201ENST00000623639 567 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC004943.1-203ENST00000624370 1074 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 TEX41-279ENST00000629149 609 ntTSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC140479.4-205ENST00000636339 820 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 AC007485.2-201ENST00000623493 1667 ntBASIC6.55□□□□□ -1.36
VMP1Q96GC9 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
VMP1Q96GC9 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VMP1Q96GC9 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
VMP1Q96GC9 TPTE2P2-201ENST00000403471 1466 ntBASIC6.54□□□□□ -1.36
VMP1Q96GC9 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
VMP1Q96GC9 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 AC123769.1-201ENST00000530992 3192 ntBASIC6.54□□□□□ -1.36
VMP1Q96GC9 AC105114.1-201ENST00000624795 1862 ntBASIC6.54□□□□□ -1.36
VMP1Q96GC9 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
VMP1Q96GC9 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 AL359715.1-201ENST00000404330 555 ntBASIC6.54□□□□□ -1.36
VMP1Q96GC9 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.54□□□□□ -1.36
VMP1Q96GC9 OR52N3P-201ENST00000413417 934 ntBASIC6.54□□□□□ -1.36
VMP1Q96GC9 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC6.54□□□□□ -1.36
VMP1Q96GC9 SNX19-202ENST00000426933 888 ntTSL 2 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms