Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC7.92□□□□□ -1.14
COL5A3P25940 AC084337.1-201ENST00000524809 686 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC7.92□□□□□ -1.14
COL5A3P25940 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.92□□□□□ -1.14
COL5A3P25940 BDNF-201ENST00000314915 4340 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
COL5A3P25940 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 EPPK1-201ENST00000568225 15530 ntAPPRIS ALT2 BASIC7.92□□□□□ -1.14
COL5A3P25940 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 MIR1178-201ENST00000408396 91 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 RPL35AP3-201ENST00000414680 288 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC093155.2-201ENST00000420734 937 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 DUTP4-201ENST00000424782 475 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 MORF4L1P5-201ENST00000433352 961 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AL512637.1-201ENST00000439523 1231 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC064862.4-201ENST00000442180 334 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 DNAJC19P5-201ENST00000443295 316 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC7.92□□□□□ -1.14
COL5A3P25940 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC7.92□□□□□ -1.14
COL5A3P25940 RN7SL799P-201ENST00000475891 298 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC092824.1-201ENST00000483524 576 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC091965.3-201ENST00000506236 208 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC7.92□□□□□ -1.14
COL5A3P25940 RPA2P3-201ENST00000533268 770 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC7.92□□□□□ -1.14
COL5A3P25940 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC7.92□□□□□ -1.14
COL5A3P25940 AC016180.1-201ENST00000567945 403 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
COL5A3P25940 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL5A3P25940 AL021707.7-201ENST00000607991 416 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 MIR6826-201ENST00000617808 98 ntBASIC7.92□□□□□ -1.14
COL5A3P25940 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC7.92□□□□□ -1.14
COL5A3P25940 ZNF217-202ENST00000371471 5796 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.91□□□□□ -1.14
COL5A3P25940 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC7.91□□□□□ -1.14
COL5A3P25940 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 AC105114.1-201ENST00000624795 1862 ntBASIC7.91□□□□□ -1.14
COL5A3P25940 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
COL5A3P25940 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 AC130360.2-201ENST00000533477 1556 ntBASIC7.91□□□□□ -1.14
COL5A3P25940 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC7.91□□□□□ -1.14
COL5A3P25940 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
COL5A3P25940 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 RN7SKP161-201ENST00000411110 305 ntBASIC7.91□□□□□ -1.14
COL5A3P25940 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC7.91□□□□□ -1.14
COL5A3P25940 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 AC007225.2-201ENST00000562529 256 ntBASIC7.91□□□□□ -1.14
COL5A3P25940 SNORD95-201ENST00000579879 68 ntBASIC7.91□□□□□ -1.14
COL5A3P25940 COX6CP7-201ENST00000597056 208 ntBASIC7.91□□□□□ -1.14
COL5A3P25940 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.91□□□□□ -1.14
COL5A3P25940 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
COL5A3P25940 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC7.91□□□□□ -1.14
COL5A3P25940 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC7.91□□□□□ -1.14
COL5A3P25940 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC7.91□□□□□ -1.14
COL5A3P25940 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL5A3P25940 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.91□□□□□ -1.14
COL5A3P25940 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC7.91□□□□□ -1.14
COL5A3P25940 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC7.9□□□□□ -1.14
COL5A3P25940 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC7.9□□□□□ -1.14
COL5A3P25940 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 OR9K1P-201ENST00000326513 941 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 SNORA58B-201ENST00000364259 136 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 AL445238.1-204ENST00000400311 463 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 RNA5SP156-201ENST00000410250 110 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC7.9□□□□□ -1.14
COL5A3P25940 BX323845.3-201ENST00000428215 527 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 DNAJA1P6-201ENST00000437347 354 ntBASIC7.9□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms