Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 RN7SKP47-201ENST00000365347 328 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 MIR323B-201ENST00000385269 82 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 LDHAP5-201ENST00000394996 622 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL136100.1-201ENST00000407696 330 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 RNU4-64P-201ENST00000410795 131 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 UOX-201ENST00000471089 899 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 RN7SL350P-201ENST00000492591 299 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 CAB39P1-201ENST00000502277 460 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AP004607.6-201ENST00000525033 1202 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 OR4A21P-201ENST00000532759 944 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC010287.1-201ENST00000566916 357 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 MIR378C-201ENST00000578683 81 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC126365.2-201ENST00000580630 379 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 IGLJCOR18-201ENST00000584002 424 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 BNIP3P39-201ENST00000601077 554 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL513218.1-201ENST00000606527 391 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL137000.1-201ENST00000610528 1244 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
DKK3Q9UBP4 AC095038.1-201ENST00000429248 1591 ntBASIC6.95□□□□□ -1.3
DKK3Q9UBP4 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 TMC3-AS1-206ENST00000612811 2726 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 TTC41P-205ENST00000551270 3963 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AL079341.1-201ENST00000404701 1207 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 SNORA81-201ENST00000408493 178 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 ETF1P1-206ENST00000427296 984 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 RN7SL390P-201ENST00000470634 284 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC025181.1-201ENST00000477507 416 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 RN7SL655P-201ENST00000486087 298 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 RPL37AP8-201ENST00000494116 276 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 PABPC1P1-201ENST00000506347 591 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 OR8K2P-201ENST00000524645 927 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 PPIAP6-201ENST00000557078 499 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 CCL2-202ENST00000580907 736 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC026951.2-201ENST00000613847 241 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 Z95114.1-201ENST00000624264 14574 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 DDX43P1-201ENST00000510713 1763 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AL512329.1-201ENST00000404600 1592 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms