Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HMGA1P17096 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 MAPK10-383ENST00000642032 3390 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 OR2M1P-201ENST00000318104 951 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGA1P17096 AL354707.3-201ENST00000427308 331 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGA1P17096 HMGB1P7-201ENST00000450921 612 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 RN7SL254P-201ENST00000460609 284 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 RN7SL104P-201ENST00000498686 293 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 NPIPB14P-203ENST00000532298 987 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGA1P17096 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 MIR4701-201ENST00000583094 63 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 AC090616.1-201ENST00000583895 447 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 AC015818.6-201ENST00000584274 634 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 MIR6778-201ENST00000617912 73 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 AP001052.1-201ENST00000626421 99 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 SMN2-214ENST00000626847 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 AC011379.1-201ENST00000508713 3025 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 AC009120.2-204ENST00000621548 2032 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGA1P17096 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGA1P17096 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HMGA1P17096 AC127070.3-201ENST00000503695 3263 ntBASIC6.72□□□□□ -1.33
HMGA1P17096 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC6.71□□□□□ -1.33
HMGA1P17096 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.71□□□□□ -1.33
HMGA1P17096 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
HMGA1P17096 MELK-207ENST00000536860 2342 ntTSL 2 BASIC6.71□□□□□ -1.33
HMGA1P17096 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.71□□□□□ -1.33
HMGA1P17096 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGA1P17096 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 SNORD16-201ENST00000362803 99 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HMGA1P17096 MIR1282-201ENST00000408865 101 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 AL157884.1-201ENST00000424561 454 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 AC112492.2-201ENST00000432774 1030 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 PMS2P9-201ENST00000441237 515 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGA1P17096 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 AC108103.1-201ENST00000511286 446 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 IGHV4-55-201ENST00000520889 368 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.71□□□□□ -1.34
HMGA1P17096 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGA1P17096 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 AL953862.2-201ENST00000603089 820 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 AL080312.2-201ENST00000613001 630 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 RN7SL261P-201ENST00000613441 282 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.71□□□□□ -1.34
HMGA1P17096 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HMGA1P17096 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 AP003119.3-201ENST00000566747 4192 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 AC123769.2-201ENST00000624332 5984 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 AC104966.1-201ENST00000467010 1464 ntBASIC6.71□□□□□ -1.34
HMGA1P17096 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGA1P17096 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGA1P17096 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HMGA1P17096 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGA1P17096 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.71□□□□□ -1.34
HMGA1P17096 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGA1P17096 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HMGA1P17096 AL136984.1-201ENST00000607611 1893 ntBASIC6.7□□□□□ -1.34
HMGA1P17096 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGA1P17096 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HMGA1P17096 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HMGA1P17096 AC125238.2-201ENST00000430003 1440 ntBASIC6.7□□□□□ -1.34
HMGA1P17096 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 329.8 ms