Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.26□□□□□ -1.41
COL5A1P20908 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
COL5A1P20908 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC6.26□□□□□ -1.41
COL5A1P20908 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.26□□□□□ -1.41
COL5A1P20908 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC6.26□□□□□ -1.41
COL5A1P20908 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 AC053481.2-202ENST00000582394 1500 ntBASIC6.26□□□□□ -1.41
COL5A1P20908 MAPK10-344ENST00000641718 3746 ntBASIC6.26□□□□□ -1.41
COL5A1P20908 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC6.26□□□□□ -1.41
COL5A1P20908 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A1P20908 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.26□□□□□ -1.41
COL5A1P20908 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A1P20908 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A1P20908 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
COL5A1P20908 AL049697.3-201ENST00000406493 982 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A1P20908 CDY8P-201ENST00000428380 1279 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 RPL6P30-201ENST00000443382 862 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 CDY20P-201ENST00000447528 1279 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.25□□□□□ -1.41
COL5A1P20908 NXT1P1-201ENST00000458481 316 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC117395.1-201ENST00000487390 403 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC008429.4-201ENST00000521201 182 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC090826.1-203ENST00000569235 490 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC015818.6-201ENST00000584274 634 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 FAM72A-208ENST00000607379 1139 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 USP48-203ENST00000374732 3037 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A1P20908 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 AC093225.1-201ENST00000506867 1408 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 AP000866.6-201ENST00000638898 3579 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC6.25□□□□□ -1.41
COL5A1P20908 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A1P20908 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A1P20908 OR7E25P-201ENST00000344844 931 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A1P20908 RNA5SP110-201ENST00000362638 115 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC017035.1-201ENST00000411999 1115 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.25□□□□□ -1.41
COL5A1P20908 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 RN7SL104P-201ENST00000498686 293 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC092332.1-201ENST00000563684 829 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A1P20908 MIR4700-201ENST00000578311 74 ntBASIC6.25□□□□□ -1.41
COL5A1P20908 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A1P20908 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A1P20908 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A1P20908 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A1P20908 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.24□□□□□ -1.41
COL5A1P20908 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A1P20908 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
COL5A1P20908 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A1P20908 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A1P20908 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A1P20908 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A1P20908 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
COL5A1P20908 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A1P20908 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms