| MT1A | P04731 | UBTFL2-201 | ENST00000411859 | 1191 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | EMX2OS-201 | ENST00000412075 | 1025 nt | TSL 2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | NR1I3-208 | ENST00000412844 | 989 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RANP6-201 | ENST00000413691 | 644 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC233728.1-201 | ENST00000418049 | 218 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL035401.1-201 | ENST00000420572 | 871 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | IGKV3OR2-268-201 | ENST00000421835 | 350 nt | APPRIS P1 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL133268.4-201 | ENST00000424868 | 472 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | LINC01728-201 | ENST00000428529 | 524 nt | TSL 2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | GAPDHP19-201 | ENST00000431768 | 1005 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC003989.1-201 | ENST00000434569 | 565 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RPEP4-201 | ENST00000437636 | 602 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC064862.5-201 | ENST00000440618 | 334 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | PA2G4P1-201 | ENST00000442248 | 1197 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL356121.1-201 | ENST00000442911 | 156 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL139161.1-201 | ENST00000443207 | 190 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL031681.1-201 | ENST00000443304 | 400 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL020997.1-201 | ENST00000446554 | 349 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RPS18P1-201 | ENST00000447840 | 458 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL358612.1-201 | ENST00000452911 | 481 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL139156.3-201 | ENST00000454802 | 394 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC236972.4-201 | ENST00000458091 | 963 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SNRPCP11-201 | ENST00000492453 | 205 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SNORA58-201 | ENST00000505219 | 137 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MRPL57P6-201 | ENST00000506570 | 309 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RCHY1-206 | ENST00000507014 | 650 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | NR1I3-229 | ENST00000511748 | 480 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MRPS5P3-201 | ENST00000515577 | 166 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC011396.2-201 | ENST00000515598 | 582 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC022915.3-201 | ENST00000518620 | 594 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | TBCA-209 | ENST00000522370 | 435 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | IGLV3-6-201 | ENST00000523937 | 250 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AP002954.1-201 | ENST00000526274 | 425 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL137224.1-201 | ENST00000527984 | 389 nt | TSL 2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AP000662.1-201 | ENST00000530952 | 487 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RAB30-209 | ENST00000532548 | 644 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | TPRXL-210 | ENST00000532753 | 478 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | OR9G2P-201 | ENST00000533326 | 880 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC100768.2-201 | ENST00000534068 | 683 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SLC14A1-206 | ENST00000535474 | 1048 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | PRH1-204 | ENST00000539853 | 837 nt | APPRIS ALT2 TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RPL3P13-201 | ENST00000550415 | 216 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | ASXL1-208 | ENST00000555343 | 1034 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MIR9-3HG-211 | ENST00000561037 | 779 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC007496.2-201 | ENST00000564801 | 547 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC026462.3-201 | ENST00000565153 | 557 nt | TSL 2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC013640.1-201 | ENST00000565366 | 565 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | BLOC1S6-209 | ENST00000565409 | 616 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC092376.1-201 | ENST00000569677 | 335 nt | TSL 2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RN7SL208P-201 | ENST00000577964 | 296 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC007923.1-201 | ENST00000577970 | 505 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MIR744-201 | ENST00000578242 | 98 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MIR3157-201 | ENST00000578688 | 85 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | PIRT-201 | ENST00000580256 | 3810 nt | APPRIS P1 TSL 2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | RN7SL66P-201 | ENST00000582099 | 264 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC024267.2-201 | ENST00000582737 | 417 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | LINC01028-201 | ENST00000586373 | 1045 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | CHMP1B-AS1-201 | ENST00000586474 | 553 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AP001269.1-201 | ENST00000592820 | 528 nt | TSL 4 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SOX9-AS1-216 | ENST00000602213 | 821 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC091193.1-201 | ENST00000604640 | 448 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC114477.1-201 | ENST00000605097 | 605 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL390877.1-201 | ENST00000605704 | 214 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | PCGEM1-202 | ENST00000606314 | 759 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MIR6885-201 | ENST00000612241 | 66 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | U1.41-201 | ENST00000617626 | 165 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SNX18P10-201 | ENST00000625014 | 519 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL078581.3-201 | ENST00000627304 | 744 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | TTN-AS1-268 | ENST00000629094 | 604 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL161457.2-202 | ENST00000629161 | 743 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SCRN1-210 | ENST00000631335 | 423 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | LINC00598-209 | ENST00000635966 | 1148 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AL049767.1-201 | ENST00000636811 | 514 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC011346.1-204 | ENST00000638089 | 1210 nt | APPRIS P5 TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC099654.15-201 | ENST00000639802 | 509 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC008957.3-201 | ENST00000624112 | 2242 nt | BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | SLC2A14-218 | ENST00000543909 | 4125 nt | APPRIS P3 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | BRWD3-201 | ENST00000373275 | 11381 nt | APPRIS P1 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | IL31RA-203 | ENST00000359040 | 2529 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | MYBPC1-223 | ENST00000553190 | 3777 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | TRMT13-202 | ENST00000370141 | 3129 nt | APPRIS P1 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | ADAM7-204 | ENST00000520720 | 1870 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | NEDD4L-207 | ENST00000435432 | 3417 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AXDND1-214 | ENST00000617277 | 3405 nt | APPRIS ALT2 TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | ATP13A5-201 | ENST00000342358 | 4027 nt | APPRIS P1 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | CD96-201 | ENST00000283285 | 4324 nt | APPRIS P4 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | TCF4-278 | ENST00000636400 | 8343 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AAK1-203 | ENST00000409085 | 11345 nt | APPRIS P1 TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | TGIF1-211 | ENST00000548489 | 1536 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | ZC3H8-208 | ENST00000615791 | 1527 nt | APPRIS ALT2 TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC087516.2-201 | ENST00000558963 | 3042 nt | TSL 3 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | PUM2-201 | ENST00000319801 | 6002 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | NRXN1-248 | ENST00000636345 | 3595 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | NBPF14-209 | ENST00000620240 | 2656 nt | TSL 5 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | AC004690.2-201 | ENST00000472838 | 1754 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | GYPA-214 | ENST00000641688 | 1764 nt | APPRIS ALT2 BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | CASC15-201 | ENST00000444265 | 1497 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | FAM221B-203 | ENST00000423537 | 2931 nt | APPRIS P2 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | LINC-ROR-201 | ENST00000553704 | 2603 nt | TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| MT1A | P04731 | ESRRG-203 | ENST00000361395 | 5216 nt | APPRIS P1 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |