Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CYP2C8-211ENST00000539050 2024 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 GTF2IP7-201ENST00000434037 2399 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 AC079061.1-201ENST00000499579 3075 ntTSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
MSX1P28360 BCO2-201ENST00000357685 2930 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 ZNF714-210ENST00000620627 2066 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 ADH7-201ENST00000209665 2289 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 EGFLAM-AS4-201ENST00000512496 1579 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 NOP14-AS1-207ENST00000515194 3860 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 AL353898.3-201ENST00000624679 1755 ntBASIC7.72□□□□□ -1.17
MSX1P28360 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 LRRC4C-202ENST00000527150 3085 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 MBD3L1-201ENST00000305625 748 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
MSX1P28360 OR10G4-201ENST00000320891 936 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
MSX1P28360 TMSB4XP4-201ENST00000323496 618 ntBASIC7.72□□□□□ -1.17
MSX1P28360 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 RNU6-353P-201ENST00000364266 108 ntBASIC7.72□□□□□ -1.17
MSX1P28360 RNU6-1251P-201ENST00000364502 107 ntBASIC7.72□□□□□ -1.17
MSX1P28360 OR1L1-202ENST00000373686 1083 ntBASIC7.72□□□□□ -1.17
MSX1P28360 CAPNS1P1-201ENST00000401029 633 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AL391422.1-201ENST00000402155 436 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 SNRK-AS1-201ENST00000422681 750 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 EIF3IP1-201ENST00000433048 967 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC092427.1-201ENST00000439177 601 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC104695.1-201ENST00000439700 849 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 AL158214.1-201ENST00000444423 404 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 CYP4F25P-201ENST00000446871 520 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 AL365436.1-201ENST00000452587 495 ntBASIC7.72□□□□□ -1.17
MSX1P28360 RPL21P92-201ENST00000454107 476 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AL672167.3-201ENST00000465951 960 ntBASIC7.72□□□□□ -1.17
MSX1P28360 RN7SL368P-201ENST00000473384 277 ntBASIC7.72□□□□□ -1.17
MSX1P28360 DAZAP2P1-201ENST00000475212 503 ntBASIC7.72□□□□□ -1.17
MSX1P28360 FTH1P4-201ENST00000480365 553 ntBASIC7.72□□□□□ -1.17
MSX1P28360 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 RN7SL608P-201ENST00000492377 279 ntBASIC7.72□□□□□ -1.17
MSX1P28360 NENFP3-201ENST00000503735 313 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 NACAP5-201ENST00000509863 636 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC104123.1-202ENST00000511775 581 ntTSL 4 BASIC7.72□□□□□ -1.17
MSX1P28360 AC020688.1-201ENST00000519282 1248 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC003991.2-201ENST00000520993 576 ntTSL 4 BASIC7.72□□□□□ -1.17
MSX1P28360 FLJ46284-203ENST00000521230 407 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 IMPA1P1-202ENST00000522318 332 ntTSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC7.72□□□□□ -1.17
MSX1P28360 OR9G2P-201ENST00000533326 880 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC018653.2-201ENST00000540190 238 ntBASIC7.72□□□□□ -1.17
MSX1P28360 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC7.72□□□□□ -1.17
MSX1P28360 AC005726.4-201ENST00000582858 458 ntBASIC7.72□□□□□ -1.17
MSX1P28360 SYPL1P2-201ENST00000582878 727 ntBASIC7.72□□□□□ -1.17
MSX1P28360 MIR4314-201ENST00000583321 92 ntBASIC7.72□□□□□ -1.17
MSX1P28360 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 AC020908.2-201ENST00000595134 405 ntTSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 AC018926.2-201ENST00000611214 498 ntBASIC7.72□□□□□ -1.17
MSX1P28360 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 UBE2Q2P2-203ENST00000613592 761 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AC091953.4-201ENST00000625179 341 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AL355480.4-201ENST00000626823 69 ntBASIC7.72□□□□□ -1.17
MSX1P28360 AL583852.1-201ENST00000635018 572 ntTSL 4 BASIC7.72□□□□□ -1.17
MSX1P28360 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 MAGI2-214ENST00000628781 2013 ntTSL 2 BASIC7.72□□□□□ -1.17
MSX1P28360 ALG8-221ENST00000615266 1469 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 HELQ-204ENST00000510985 3315 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 SLFN12L-202ENST00000361112 2752 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 LINC02009-201ENST00000635852 2951 ntTSL 3 BASIC7.72□□□□□ -1.17
MSX1P28360 MRRFP1-201ENST00000435941 1675 ntBASIC7.72□□□□□ -1.17
MSX1P28360 ZNF225-204ENST00000590612 2404 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 FRG2-201ENST00000378763 2084 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 FRG2B-202ENST00000443774 2094 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 AC135731.2-201ENST00000603029 2098 ntBASIC7.72□□□□□ -1.17
MSX1P28360 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC7.72□□□□□ -1.17
MSX1P28360 CDY4P-201ENST00000418290 1513 ntBASIC7.72□□□□□ -1.17
MSX1P28360 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSX1P28360 AL049833.3-201ENST00000623920 3738 ntBASIC7.72□□□□□ -1.17
MSX1P28360 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC7.71□□□□□ -1.17
MSX1P28360 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
MSX1P28360 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC7.71□□□□□ -1.17
MSX1P28360 OR4G1P-202ENST00000641173 1788 ntBASIC7.71□□□□□ -1.17
MSX1P28360 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.71□□□□□ -1.17
MSX1P28360 CDH13-202ENST00000428848 2195 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms