Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC010333.3-201ENST00000615100 402 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 AC005899.7-201ENST00000618199 588 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 SNORA16A-202ENST00000628458 135 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 AL117378.2-201ENST00000622916 1337 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 SLC2A3P4-201ENST00000521259 1471 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DMBP28068 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 HSP90AA2P-201ENST00000530115 2196 ntBASIC5.11□□□□□ -1.59
HLA-DMBP28068 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HLA-DMBP28068 RNF145-205ENST00000518802 2603 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL139384.2-201ENST00000613809 3590 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 GMFG-201ENST00000253054 616 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 RNU1-56P-201ENST00000391303 164 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 RNA5SP280-201ENST00000411230 115 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 SNX19-202ENST00000426933 888 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 RPL23AP28-201ENST00000448062 470 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC009244.1-201ENST00000450566 258 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 GOT2P2-201ENST00000450663 1251 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL354872.1-201ENST00000456361 967 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 PPP1R2P6-201ENST00000478565 588 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL135933.1-201ENST00000498657 802 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 SNORA81.2-201ENST00000516868 170 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 RBMS2P1-201ENST00000525031 1226 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 Z97989.1-201ENST00000531702 2421 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 MIR4800-201ENST00000537353 80 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL359694.2-201ENST00000567753 1615 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC007998.4-201ENST00000612496 2533 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 MIR6070-201ENST00000613967 103 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AL445647.2-201ENST00000615170 130 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC091059.2-201ENST00000623355 614 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
HLA-DMBP28068 AC006213.6-201ENST00000623722 4179 ntBASIC5.1□□□□□ -1.59
HLA-DMBP28068 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DMBP28068 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AL512353.3-201ENST00000417517 1326 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 SNORA70.3-201ENST00000365075 132 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 PDCL3P5-201ENST00000398028 722 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 RN7SKP268-201ENST00000411107 316 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms