Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU1-49P-201ENST00000363468 159 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 MIR937-201ENST00000401271 86 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC8.05□□□□□ -1.12
COL5A3P25940 AL161636.2-201ENST00000445179 927 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 OR2A1-AS1-202ENST00000467944 422 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 AC124945.1-201ENST00000485133 188 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC8.05□□□□□ -1.12
COL5A3P25940 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC8.05□□□□□ -1.12
COL5A3P25940 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC8.05□□□□□ -1.12
COL5A3P25940 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC8.05□□□□□ -1.12
COL5A3P25940 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC8.05□□□□□ -1.12
COL5A3P25940 AC009237.12-201ENST00000604755 742 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 AC073488.3-201ENST00000631611 778 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL5A3P25940 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC8.05□□□□□ -1.12
COL5A3P25940 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC8.05□□□□□ -1.12
COL5A3P25940 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 EIF3EP1-201ENST00000433978 1316 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 ERBB3-203ENST00000415288 4353 ntTSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 CNPY1-201ENST00000321736 2378 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
COL5A3P25940 RNU4ATAC2P-201ENST00000408674 126 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC8.04□□□□□ -1.12
COL5A3P25940 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC8.04□□□□□ -1.12
COL5A3P25940 ZNF619P1-201ENST00000446539 752 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC8.04□□□□□ -1.12
COL5A3P25940 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 RPL34P33-201ENST00000486062 334 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 RN7SL561P-201ENST00000488553 281 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 RPL5P11-201ENST00000498068 893 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 PSMA2P2-201ENST00000504319 686 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC8.04□□□□□ -1.12
COL5A3P25940 RNA5SP438-201ENST00000516561 112 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 RNA5SP271-201ENST00000516700 88 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC8.04□□□□□ -1.12
COL5A3P25940 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC8.04□□□□□ -1.12
COL5A3P25940 MIR3176-201ENST00000582210 90 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC8.04□□□□□ -1.12
COL5A3P25940 AL357153.4-201ENST00000620487 1016 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 AL136228.1-201ENST00000622221 319 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC8.04□□□□□ -1.12
COL5A3P25940 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 DMBT1-203ENST00000344338 7656 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 DMBT1-205ENST00000368955 7656 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
COL5A3P25940 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 USP40-202ENST00000409945 1946 ntTSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 AC122713.2-201ENST00000624942 3335 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 MAPK10-287ENST00000641217 3037 ntBASIC8.04□□□□□ -1.12
COL5A3P25940 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
COL5A3P25940 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC8.04□□□□□ -1.12
COL5A3P25940 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL5A3P25940 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC8.04□□□□□ -1.12
COL5A3P25940 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 RNU1-46P-201ENST00000384425 164 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC091390.2-201ENST00000432573 374 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC8.03□□□□□ -1.12
COL5A3P25940 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 RN7SL717P-201ENST00000478343 297 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC008945.1-201ENST00000505144 499 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC8.03□□□□□ -1.12
COL5A3P25940 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC8.03□□□□□ -1.12
COL5A3P25940 AC106800.2-201ENST00000514009 1103 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC112191.2-201ENST00000522428 333 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 IGLV3-6-201ENST00000523937 250 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AP003396.4-201ENST00000527574 265 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC233702.7-202ENST00000582941 211 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC8.03□□□□□ -1.12
COL5A3P25940 AL352984.2-201ENST00000611153 546 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC018659.2-201ENST00000624690 715 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 RBMY1HP-201ENST00000382759 1389 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
COL5A3P25940 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC8.03□□□□□ -1.12
COL5A3P25940 FANCM-202ENST00000542564 6167 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
COL5A3P25940 FRMPD3-201ENST00000276185 7304 ntAPPRIS P2 TSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms