Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR7844-201ENST00000616161 122 ntBASIC7.75□□□□□ -1.17
MSX1P28360 LINC02086-204ENST00000628006 786 ntTSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 MIR3688-2-201ENST00000636963 87 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC087565.3-203ENST00000641018 837 ntBASIC7.75□□□□□ -1.17
MSX1P28360 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 AC013444.1-201ENST00000428909 1904 ntBASIC7.75□□□□□ -1.17
MSX1P28360 BBS12-201ENST00000314218 3244 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 GJC1-201ENST00000330514 3295 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 BRDT-203ENST00000370389 3696 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 AC008817.1-201ENST00000504215 1562 ntBASIC7.75□□□□□ -1.17
MSX1P28360 SLC24A1-211ENST00000544319 3169 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 C16orf62-205ENST00000513947 2501 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 THBS3-211ENST00000541990 2928 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 ELF4-204ENST00000615377 3878 ntTSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 CUL4AP1-201ENST00000514750 1863 ntBASIC7.75□□□□□ -1.17
MSX1P28360 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 BRDT-205ENST00000399546 3357 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 AC087392.3-202ENST00000358446 1754 ntBASIC7.74□□□□□ -1.17
MSX1P28360 CPA2-201ENST00000222481 1366 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 CEP41-219ENST00000616628 3315 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 STEAP3-AS1-201ENST00000454260 3218 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 SMR3A-201ENST00000226460 665 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 AIF1-203ENST00000376059 711 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 RNU6-549P-201ENST00000384433 107 ntBASIC7.74□□□□□ -1.17
MSX1P28360 SNORA14B-201ENST00000384452 135 ntBASIC7.74□□□□□ -1.17
MSX1P28360 OLA1P1-201ENST00000396387 1189 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AL136968.2-201ENST00000407959 354 ntBASIC7.74□□□□□ -1.17
MSX1P28360 MIR1184-2-201ENST00000408263 99 ntBASIC7.74□□□□□ -1.17
MSX1P28360 MIR1184-1-201ENST00000408606 99 ntBASIC7.74□□□□□ -1.17
MSX1P28360 MIR1184-3-201ENST00000408676 99 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AL022724.1-201ENST00000412132 554 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AL160153.1-201ENST00000415285 429 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AC008937.2-201ENST00000415589 619 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 HCG21-204ENST00000419481 605 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 GACAT1-201ENST00000419650 577 ntTSL 4 BASIC7.74□□□□□ -1.17
MSX1P28360 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 VOPP1-205ENST00000427700 632 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 AL138957.1-201ENST00000435156 342 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AL353615.1-201ENST00000450850 390 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 RN7SL841P-201ENST00000470547 297 ntBASIC7.74□□□□□ -1.17
MSX1P28360 GAPDHP22-201ENST00000491037 413 ntBASIC7.74□□□□□ -1.17
MSX1P28360 RPL12P7-201ENST00000493832 494 ntBASIC7.74□□□□□ -1.17
MSX1P28360 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 AC244505.1-201ENST00000502642 307 ntBASIC7.74□□□□□ -1.17
MSX1P28360 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC7.74□□□□□ -1.17
MSX1P28360 STMN1P2-201ENST00000508435 439 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 GUSBP3-201ENST00000509348 423 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AC106872.4-201ENST00000510050 523 ntBASIC7.74□□□□□ -1.17
MSX1P28360 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 AC008837.2-201ENST00000513076 418 ntBASIC7.74□□□□□ -1.17
MSX1P28360 GAPDHP44-201ENST00000513513 1007 ntBASIC7.74□□□□□ -1.17
MSX1P28360 RNA5SP159-201ENST00000517161 103 ntBASIC7.74□□□□□ -1.17
MSX1P28360 PGAM1P8-201ENST00000526979 453 ntBASIC7.74□□□□□ -1.17
MSX1P28360 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AP002991.1-201ENST00000539305 574 ntTSL 4 BASIC7.74□□□□□ -1.17
MSX1P28360 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 AC013457.1-201ENST00000556770 1011 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AC078905.1-201ENST00000560803 509 ntTSL 3 BASIC7.74□□□□□ -1.17
MSX1P28360 AL023284.4-201ENST00000564248 374 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AF001548.1-201ENST00000577048 550 ntTSL 4 BASIC7.74□□□□□ -1.17
MSX1P28360 AC125421.2-201ENST00000580370 583 ntTSL 4 BASIC7.74□□□□□ -1.17
MSX1P28360 SRP68P1-201ENST00000584247 269 ntBASIC7.74□□□□□ -1.17
MSX1P28360 RPL10P15-201ENST00000585756 315 ntBASIC7.74□□□□□ -1.17
MSX1P28360 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC7.74□□□□□ -1.17
MSX1P28360 AC012370.2-202ENST00000600508 1099 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 EDRF1-AS1-205ENST00000601363 712 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 AC010680.3-201ENST00000604215 520 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 CARMN-212ENST00000614896 536 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 AL133370.2-201ENST00000619934 439 ntBASIC7.74□□□□□ -1.17
MSX1P28360 FP236315.1-201ENST00000623723 457 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 AL158175.1-201ENST00000634327 1127 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 TRIM48-201ENST00000417545 1445 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 LGALS8-202ENST00000323938 1855 ntTSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 PTGS2-201ENST00000367468 4514 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 PIGA-201ENST00000333590 3652 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms