Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC020914.7-201ENST00000594477 545 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC012175.1-201ENST00000603755 531 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 uc_338.29-201ENST00000615099 168 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 FANCD2P2-201ENST00000437591 1400 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC092111.1-201ENST00000618256 3358 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 RNA5SP308-201ENST00000362532 115 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 MIR1275-201ENST00000408770 80 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 VN1R53P-201ENST00000429536 957 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC242426.1-201ENST00000435270 960 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC128677.1-201ENST00000436016 442 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC104339.1-201ENST00000465478 348 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC096743.1-201ENST00000485172 319 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 GUSBP9-201ENST00000510138 584 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC093816.1-201ENST00000515076 913 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC087752.2-201ENST00000521219 281 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 SETP17-201ENST00000534163 817 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC004908.1-201ENST00000606572 541 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 AC005514.1-201ENST00000623521 208 ntBASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDDC3Q8N4P3 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.31
HDDC3Q8N4P3 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
HDDC3Q8N4P3 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
HDDC3Q8N4P3 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
HDDC3Q8N4P3 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.9□□□□□ -1.31
HDDC3Q8N4P3 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 PPIAP26-201ENST00000377951 522 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 RNA5SP115-201ENST00000411160 107 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 HMGN1P6-201ENST00000438508 291 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 RPSAP40-201ENST00000442343 891 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AL034399.1-201ENST00000451535 380 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 SNX18P23-201ENST00000510867 677 ntBASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC6.89□□□□□ -1.31
HDDC3Q8N4P3 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms