Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC5.7□□□□□ -1.5
CDX1P47902 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CDX1P47902 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CDX1P47902 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.7□□□□□ -1.5
CDX1P47902 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 AC022905.1-201ENST00000503430 3048 ntBASIC5.69□□□□□ -1.5
CDX1P47902 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.69□□□□□ -1.5
CDX1P47902 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 AC023886.2-201ENST00000321285 411 ntBASIC5.69□□□□□ -1.5
CDX1P47902 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 U3.48-201ENST00000363172 216 ntBASIC5.69□□□□□ -1.5
CDX1P47902 U3.14-201ENST00000365363 227 ntBASIC5.69□□□□□ -1.5
CDX1P47902 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 AC074375.1-201ENST00000372993 192 ntBASIC5.69□□□□□ -1.5
CDX1P47902 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CDX1P47902 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CDX1P47902 HNRNPH1P2-201ENST00000396845 1210 ntBASIC5.69□□□□□ -1.5
CDX1P47902 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 SOD1P1-201ENST00000407803 440 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 FDPSP1-201ENST00000424976 1071 ntBASIC5.69□□□□□ -1.5
CDX1P47902 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 AC097523.2-201ENST00000435551 652 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 AC239800.1-201ENST00000442049 719 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AL158214.1-201ENST00000444423 404 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 RPS4XP19-201ENST00000460237 736 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AC104849.1-201ENST00000462623 405 ntBASIC5.69□□□□□ -1.5
CDX1P47902 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 AC063943.2-201ENST00000495697 534 ntBASIC5.69□□□□□ -1.5
CDX1P47902 PFN2-217ENST00000498307 556 ntTSL 4 BASIC5.69□□□□□ -1.5
CDX1P47902 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 AC073648.3-201ENST00000504939 925 ntBASIC5.69□□□□□ -1.5
CDX1P47902 OR7E163P-201ENST00000505943 894 ntBASIC5.69□□□□□ -1.5
CDX1P47902 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 IGLV1-62-201ENST00000518003 441 ntBASIC5.69□□□□□ -1.5
CDX1P47902 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC5.69□□□□□ -1.5
CDX1P47902 AL117192.1-204ENST00000553485 449 ntTSL 2 BASIC5.69□□□□□ -1.5
CDX1P47902 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
CDX1P47902 DLGAP1-AS3-201ENST00000577649 1258 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 AC005070.2-201ENST00000604391 260 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AC073389.3-201ENST00000609434 935 ntBASIC5.69□□□□□ -1.5
CDX1P47902 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 AC103564.3-201ENST00000621194 220 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AL590396.3-201ENST00000636334 300 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AC243725.1-201ENST00000637164 436 ntBASIC5.69□□□□□ -1.5
CDX1P47902 AP001153.1-201ENST00000641024 338 ntBASIC5.69□□□□□ -1.5
CDX1P47902 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CDX1P47902 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 AC068769.1-201ENST00000474767 2426 ntBASIC5.69□□□□□ -1.5
CDX1P47902 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 AC010168.2-201ENST00000562691 5428 ntBASIC5.69□□□□□ -1.5
CDX1P47902 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CDX1P47902 QRSL1P3-201ENST00000552666 1316 ntBASIC5.69□□□□□ -1.5
CDX1P47902 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.69□□□□□ -1.5
CDX1P47902 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 AC005225.5-201ENST00000623547 2225 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CDX1P47902 ZNF101P1-201ENST00000435701 1720 ntBASIC5.68□□□□□ -1.5
CDX1P47902 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms