Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 YBX1P10-201ENST00000444752 975 ntBASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 KRT16P6-202ENST00000425692 1426 ntBASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 AC018553.1-201ENST00000616682 1458 ntBASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
CCDC61Q9Y6R9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC61Q9Y6R9 BID-203ENST00000399765 1879 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC61Q9Y6R9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 AC004980.1-204ENST00000429707 299 ntBASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 KRT18P57-201ENST00000443599 1254 ntBASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 SLC25A3P1-201ENST00000443844 931 ntBASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 B3GAT3P1-201ENST00000471720 806 ntBASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC61Q9Y6R9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC27.26■■□□□ 1.96
CCDC61Q9Y6R9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 ARMC10P1-201ENST00000313754 855 ntBASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 AL137013.1-201ENST00000432946 1228 ntBASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 AC011506.1-201ENST00000474329 610 ntBASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 CBFB-203ENST00000561924 584 ntTSL 5 BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 AP005242.2-201ENST00000580065 1175 ntBASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC61Q9Y6R9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 GRAMD4P8-201ENST00000605465 1115 ntBASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 DGCR10-201ENST00000609839 495 ntBASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 AC079834.2-201ENST00000609776 1949 ntBASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC61Q9Y6R9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC27.24■■□□□ 1.95
CCDC61Q9Y6R9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC61Q9Y6R9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms