Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 AC027682.1-201ENST00000562846 899 ntBASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 KRT16P2-201ENST00000414673 1423 ntBASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 DPP3P2-201ENST00000416030 1696 ntBASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USH1CQ9Y6N9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USH1CQ9Y6N9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 TPRG1LP1-201ENST00000598702 760 ntBASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USH1CQ9Y6N9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 LINC01465-201ENST00000408887 1940 ntBASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 AC012414.1-201ENST00000556676 535 ntBASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms