Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 AC128688.1-201ENST00000487626 519 ntBASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 AC010203.1-204ENST00000548782 407 ntBASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 C1QL1P1-201ENST00000568105 661 ntBASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PCDHGA1Q9Y5H4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
PCDHGA1Q9Y5H4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.14■□□□□ 0.66
PCDHGA1Q9Y5H4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHGA1Q9Y5H4 PTBP1P-201ENST00000554374 1601 ntBASIC19.14■□□□□ 0.66
PCDHGA1Q9Y5H4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.14■□□□□ 0.66
PCDHGA1Q9Y5H4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHGA1Q9Y5H4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 LINC01238-205ENST00000567549 1107 ntBASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PCDHGA1Q9Y5H4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 MESTP1-201ENST00000404287 994 ntBASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 AC006011.2-201ENST00000621313 1158 ntBASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHGA1Q9Y5H4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 BX664615.1-201ENST00000443558 458 ntBASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 WWOX-216ENST00000569818 525 ntBASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDHGA1Q9Y5H4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms