Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL17A1Q9UMD9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL17A1Q9UMD9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 HYMAI.1-201ENST00000620949 238 ntBASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL17A1Q9UMD9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 MFAP1P1-201ENST00000442257 1255 ntBASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 C1orf229-201ENST00000623686 2258 ntBASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 SLC25A1P2-201ENST00000430693 912 ntBASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 AC009078.2-202ENST00000463353 338 ntBASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 AL023803.3-201ENST00000615559 522 ntBASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL17A1Q9UMD9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 RCC2P6-201ENST00000526625 1557 ntBASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 AL022342.1-201ENST00000400363 863 ntBASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 CCR12P-201ENST00000446203 998 ntBASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 PTBP1P-201ENST00000554374 1601 ntBASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL17A1Q9UMD9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 AC080038.3-201ENST00000623346 1952 ntBASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 PRR29-207ENST00000580752 458 ntTSL 3 BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL17A1Q9UMD9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL17A1Q9UMD9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 AC127496.7-201ENST00000625110 1798 ntBASIC30.27■■■□□ 2.44
COL17A1Q9UMD9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms