Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
ZCCHC3Q9NUD5 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 AC125437.2-201ENST00000625180 2167 ntBASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 CROCCP5-201ENST00000436658 830 ntBASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZCCHC3Q9NUD5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 BX276092.2-201ENST00000417668 665 ntBASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 AC006970.2-201ENST00000450065 779 ntBASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZCCHC3Q9NUD5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZCCHC3Q9NUD5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 AC023632.3-201ENST00000521633 145 ntBASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ZCCHC3Q9NUD5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
ZCCHC3Q9NUD5 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.64■□□□□ 0.58
ZCCHC3Q9NUD5 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.64■□□□□ 0.58
ZCCHC3Q9NUD5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ZCCHC3Q9NUD5 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
ZCCHC3Q9NUD5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.64■□□□□ 0.58
ZCCHC3Q9NUD5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZCCHC3Q9NUD5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZCCHC3Q9NUD5 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ZCCHC3Q9NUD5 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZCCHC3Q9NUD5 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ZCCHC3Q9NUD5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms