Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 AC092118.2-201ENST00000613495 667 ntBASIC21.38■■□□□ 1.01
SIX2Q9NPC8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX2Q9NPC8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.36■■□□□ 1.01
SIX2Q9NPC8 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.36■■□□□ 1.01
SIX2Q9NPC8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 AC091874.3-201ENST00000512672 1195 ntBASIC21.35■■□□□ 1.01
SIX2Q9NPC8 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX2Q9NPC8 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 AC098934.4-201ENST00000564127 592 ntBASIC21.34■■□□□ 1.01
SIX2Q9NPC8 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 AC093484.2-201ENST00000580996 2166 ntBASIC21.34■■□□□ 1.01
SIX2Q9NPC8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.34■■□□□ 1.01
SIX2Q9NPC8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms