Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 SLC29A4P1-201ENST00000398760 971 ntBASIC20.54■□□□□ 0.88
PCDH9Q9HC56 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 GUSBP6-202ENST00000438529 1198 ntBASIC20.54■□□□□ 0.88
PCDH9Q9HC56 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 BX276092.2-201ENST00000417668 665 ntBASIC20.53■□□□□ 0.88
PCDH9Q9HC56 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 AL109923.1-201ENST00000618799 583 ntBASIC20.53■□□□□ 0.88
PCDH9Q9HC56 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDH9Q9HC56 KRT17P1-201ENST00000399211 1546 ntBASIC20.53■□□□□ 0.88
PCDH9Q9HC56 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 AL589743.5-201ENST00000616611 1050 ntBASIC20.52■□□□□ 0.88
PCDH9Q9HC56 AC105020.6-201ENST00000621523 1217 ntBASIC20.52■□□□□ 0.88
PCDH9Q9HC56 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH9Q9HC56 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.52■□□□□ 0.87
PCDH9Q9HC56 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 LSM12P1-201ENST00000411836 588 ntBASIC20.51■□□□□ 0.87
PCDH9Q9HC56 MIPEPP3-201ENST00000412105 444 ntBASIC20.51■□□□□ 0.87
PCDH9Q9HC56 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDH9Q9HC56 AC009237.14-201ENST00000609975 1594 ntBASIC20.51■□□□□ 0.87
PCDH9Q9HC56 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 AC104771.1-201ENST00000603335 964 ntBASIC20.5■□□□□ 0.87
PCDH9Q9HC56 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH9Q9HC56 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH9Q9HC56 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH9Q9HC56 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH9Q9HC56 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms