Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.49■□□□□ 0.39
MMP28Q9H239 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
MMP28Q9H239 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MMP28Q9H239 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.48■□□□□ 0.39
MMP28Q9H239 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.48■□□□□ 0.39
MMP28Q9H239 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
MMP28Q9H239 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.48■□□□□ 0.39
MMP28Q9H239 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.48■□□□□ 0.39
MMP28Q9H239 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MMP28Q9H239 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.48■□□□□ 0.39
MMP28Q9H239 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.48■□□□□ 0.39
MMP28Q9H239 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.48■□□□□ 0.39
MMP28Q9H239 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.48■□□□□ 0.39
MMP28Q9H239 AC012414.1-201ENST00000556676 535 ntBASIC17.48■□□□□ 0.39
MMP28Q9H239 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.48■□□□□ 0.39
MMP28Q9H239 AL358852.1-201ENST00000623174 1268 ntBASIC17.48■□□□□ 0.39
MMP28Q9H239 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 AL138781.2-201ENST00000617896 1843 ntBASIC17.48■□□□□ 0.39
MMP28Q9H239 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.48■□□□□ 0.39
MMP28Q9H239 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
MMP28Q9H239 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MMP28Q9H239 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.48■□□□□ 0.39
MMP28Q9H239 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
MMP28Q9H239 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.47■□□□□ 0.39
MMP28Q9H239 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.47■□□□□ 0.39
MMP28Q9H239 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.47■□□□□ 0.39
MMP28Q9H239 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.47■□□□□ 0.39
MMP28Q9H239 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MMP28Q9H239 BX005040.4-201ENST00000637145 1518 ntBASIC17.47■□□□□ 0.39
MMP28Q9H239 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MMP28Q9H239 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.46■□□□□ 0.39
MMP28Q9H239 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MMP28Q9H239 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.46■□□□□ 0.39
MMP28Q9H239 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.46■□□□□ 0.39
MMP28Q9H239 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.46■□□□□ 0.39
MMP28Q9H239 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.46■□□□□ 0.39
MMP28Q9H239 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.46■□□□□ 0.39
MMP28Q9H239 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.46■□□□□ 0.39
MMP28Q9H239 AC009237.3-201ENST00000393279 1427 ntBASIC17.46■□□□□ 0.39
MMP28Q9H239 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MMP28Q9H239 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.46■□□□□ 0.38
MMP28Q9H239 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
MMP28Q9H239 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
MMP28Q9H239 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.38
MMP28Q9H239 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
MMP28Q9H239 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
MMP28Q9H239 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms