Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 KRT17P3-201ENST00000420566 1262 ntBASIC18.24■□□□□ 0.51
TIMP4Q99727 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.24■□□□□ 0.51
TIMP4Q99727 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.24■□□□□ 0.51
TIMP4Q99727 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.24■□□□□ 0.51
TIMP4Q99727 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.24■□□□□ 0.51
TIMP4Q99727 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.24■□□□□ 0.51
TIMP4Q99727 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.23■□□□□ 0.51
TIMP4Q99727 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
TIMP4Q99727 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.23■□□□□ 0.51
TIMP4Q99727 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.23■□□□□ 0.51
TIMP4Q99727 GCSHP5-201ENST00000443090 522 ntBASIC18.23■□□□□ 0.51
TIMP4Q99727 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.23■□□□□ 0.51
TIMP4Q99727 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
TIMP4Q99727 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.23■□□□□ 0.51
TIMP4Q99727 KRT8P36-201ENST00000489121 1440 ntBASIC18.23■□□□□ 0.51
TIMP4Q99727 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TIMP4Q99727 AC125437.2-201ENST00000625180 2167 ntBASIC18.23■□□□□ 0.51
TIMP4Q99727 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.22■□□□□ 0.51
TIMP4Q99727 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.22■□□□□ 0.51
TIMP4Q99727 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
TIMP4Q99727 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.22■□□□□ 0.51
TIMP4Q99727 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 RPS2P52-201ENST00000469610 820 ntBASIC18.22■□□□□ 0.51
TIMP4Q99727 AC142381.4-202ENST00000563973 229 ntBASIC18.22■□□□□ 0.51
TIMP4Q99727 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.22■□□□□ 0.51
TIMP4Q99727 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.22■□□□□ 0.51
TIMP4Q99727 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.22■□□□□ 0.51
TIMP4Q99727 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TIMP4Q99727 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TIMP4Q99727 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TIMP4Q99727 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TIMP4Q99727 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.21■□□□□ 0.51
TIMP4Q99727 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.21■□□□□ 0.51
TIMP4Q99727 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TIMP4Q99727 AL158047.1-201ENST00000445918 881 ntBASIC18.21■□□□□ 0.51
TIMP4Q99727 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.21■□□□□ 0.51
TIMP4Q99727 AC005829.2-201ENST00000571422 1056 ntBASIC18.21■□□□□ 0.51
TIMP4Q99727 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.21■□□□□ 0.51
TIMP4Q99727 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.21■□□□□ 0.51
TIMP4Q99727 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TIMP4Q99727 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.21■□□□□ 0.51
TIMP4Q99727 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.21■□□□□ 0.5
TIMP4Q99727 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.2■□□□□ 0.5
TIMP4Q99727 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TIMP4Q99727 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.2■□□□□ 0.5
TIMP4Q99727 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TIMP4Q99727 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TIMP4Q99727 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TIMP4Q99727 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TIMP4Q99727 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TIMP4Q99727 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.2■□□□□ 0.5
TIMP4Q99727 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms