Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC008403.3-201ENST00000598924 454 ntBASIC20.37■□□□□ 0.85
SKA1Q96BD8 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 AC099778.1-201ENST00000568593 1911 ntBASIC20.37■□□□□ 0.85
SKA1Q96BD8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 SMG8-203ENST00000578922 2178 ntBASIC20.36■□□□□ 0.85
SKA1Q96BD8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 AC008550.1-201ENST00000511500 884 ntBASIC20.36■□□□□ 0.85
SKA1Q96BD8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 AL359736.2-201ENST00000621992 437 ntBASIC20.36■□□□□ 0.85
SKA1Q96BD8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.36■□□□□ 0.85
SKA1Q96BD8 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SKA1Q96BD8 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 AC105020.6-201ENST00000621523 1217 ntBASIC20.35■□□□□ 0.85
SKA1Q96BD8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.35■□□□□ 0.85
SKA1Q96BD8 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SKA1Q96BD8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SKA1Q96BD8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SKA1Q96BD8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SKA1Q96BD8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 C1QBPP2-201ENST00000528754 825 ntBASIC20.34■□□□□ 0.85
SKA1Q96BD8 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SKA1Q96BD8 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.34■□□□□ 0.85
SKA1Q96BD8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SKA1Q96BD8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA1Q96BD8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SKA1Q96BD8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.33■□□□□ 0.85
SKA1Q96BD8 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SKA1Q96BD8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA1Q96BD8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SKA1Q96BD8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms