Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.71■□□□□ 0.91
HLA-CQ95604 AL441883.1-201ENST00000566170 1045 ntBASIC20.71■□□□□ 0.91
HLA-CQ95604 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.71■□□□□ 0.91
HLA-CQ95604 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-CQ95604 AC008622.2-201ENST00000617006 1229 ntBASIC20.71■□□□□ 0.91
HLA-CQ95604 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-CQ95604 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.71■□□□□ 0.91
HLA-CQ95604 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-CQ95604 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-CQ95604 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
HLA-CQ95604 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-CQ95604 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
HLA-CQ95604 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HLA-CQ95604 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 AC004951.3-201ENST00000418645 1148 ntBASIC20.7■□□□□ 0.9
HLA-CQ95604 TSPY17P-201ENST00000450329 467 ntBASIC20.7■□□□□ 0.9
HLA-CQ95604 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 KRT18P16-201ENST00000510337 1294 ntBASIC20.7■□□□□ 0.9
HLA-CQ95604 RN7SL510P-201ENST00000581311 263 ntBASIC20.7■□□□□ 0.9
HLA-CQ95604 AL023973.1-201ENST00000624619 620 ntBASIC20.7■□□□□ 0.9
HLA-CQ95604 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HLA-CQ95604 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HLA-CQ95604 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HLA-CQ95604 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-CQ95604 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-CQ95604 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 ATP5G2P1-201ENST00000433580 426 ntBASIC20.69■□□□□ 0.9
HLA-CQ95604 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.69■□□□□ 0.9
HLA-CQ95604 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.69■□□□□ 0.9
HLA-CQ95604 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HLA-CQ95604 MIR2861-201ENST00000636310 90 ntBASIC20.69■□□□□ 0.9
HLA-CQ95604 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HLA-CQ95604 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.69■□□□□ 0.9
HLA-CQ95604 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-CQ95604 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-CQ95604 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-CQ95604 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-CQ95604 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-CQ95604 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-CQ95604 AC008040.2-201ENST00000461049 708 ntBASIC20.68■□□□□ 0.9
HLA-CQ95604 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-CQ95604 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.68■□□□□ 0.9
HLA-CQ95604 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.68■□□□□ 0.9
HLA-CQ95604 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.68■□□□□ 0.9
HLA-CQ95604 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HLA-CQ95604 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-CQ95604 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-CQ95604 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-CQ95604 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-CQ95604 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HLA-CQ95604 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-CQ95604 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-CQ95604 TSPY21P-201ENST00000433481 731 ntBASIC20.67■□□□□ 0.9
HLA-CQ95604 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 TSPY23P-201ENST00000440136 739 ntBASIC20.67■□□□□ 0.9
HLA-CQ95604 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-CQ95604 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.67■□□□□ 0.9
HLA-CQ95604 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
HLA-CQ95604 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.67■□□□□ 0.9
HLA-CQ95604 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HLA-CQ95604 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
HLA-CQ95604 AC023511.2-201ENST00000618803 211 ntBASIC20.67■□□□□ 0.9
HLA-CQ95604 CR769767.2-201ENST00000622735 460 ntBASIC20.67■□□□□ 0.9
HLA-CQ95604 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-CQ95604 AP000593.1-201ENST00000393668 712 ntBASIC20.66■□□□□ 0.9
HLA-CQ95604 TUBB8P6-201ENST00000436895 1288 ntBASIC20.66■□□□□ 0.9
HLA-CQ95604 KRT18P38-201ENST00000449496 1282 ntBASIC20.66■□□□□ 0.9
HLA-CQ95604 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.66■□□□□ 0.9
HLA-CQ95604 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.66■□□□□ 0.9
HLA-CQ95604 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.66■□□□□ 0.9
HLA-CQ95604 AL023803.3-201ENST00000615559 522 ntBASIC20.66■□□□□ 0.9
HLA-CQ95604 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.66■□□□□ 0.9
HLA-CQ95604 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-CQ95604 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-CQ95604 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-CQ95604 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-CQ95604 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-CQ95604 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HLA-CQ95604 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-CQ95604 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms