Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMX1AQ8TE12 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 AC092720.2-201ENST00000602388 1665 ntBASIC19.41■□□□□ 0.7
LMX1AQ8TE12 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 AL353708.3-201ENST00000610272 989 ntBASIC19.41■□□□□ 0.7
LMX1AQ8TE12 CR392000.1-201ENST00000624770 1228 ntBASIC19.41■□□□□ 0.7
LMX1AQ8TE12 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.41■□□□□ 0.7
LMX1AQ8TE12 KRT16P6-202ENST00000425692 1426 ntBASIC19.41■□□□□ 0.7
LMX1AQ8TE12 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 MMP23A-201ENST00000234610 1017 ntBASIC19.4■□□□□ 0.7
LMX1AQ8TE12 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 MIR1224-201ENST00000408193 85 ntBASIC19.4■□□□□ 0.7
LMX1AQ8TE12 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMX1AQ8TE12 AP006587.1-201ENST00000534129 1502 ntBASIC19.4■□□□□ 0.7
LMX1AQ8TE12 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LMX1AQ8TE12 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LMX1AQ8TE12 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LMX1AQ8TE12 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
LMX1AQ8TE12 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LMX1AQ8TE12 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 NUDT16P1-203ENST00000513809 620 ntBASIC19.39■□□□□ 0.69
LMX1AQ8TE12 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMX1AQ8TE12 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LMX1AQ8TE12 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms