Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 TMEM179-206ENST00000616017 1645 ntBASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLRN3Q8NCR9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 BICD1-207ENST00000551848 1962 ntBASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 AC090164.3-201ENST00000610780 2143 ntBASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 AC133552.2-201ENST00000619106 1032 ntBASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 PCDHA12-202ENST00000613593 2588 ntBASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN3Q8NCR9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 SIRPAP1-201ENST00000448467 1770 ntBASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CLRN3Q8NCR9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms