Protein–RNA interactions for Protein: Q8IUD6

RNF135, E3 ubiquitin-protein ligase RNF135, humanhuman

Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF135Q8IUD6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 KRT16P5-201ENST00000455284 522 ntBASIC21.1■□□□□ 0.97
RNF135Q8IUD6 AL031963.3-201ENST00000606441 850 ntBASIC21.1■□□□□ 0.97
RNF135Q8IUD6 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF135Q8IUD6 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 AC073195.1-201ENST00000607241 877 ntBASIC21.09■□□□□ 0.97
RNF135Q8IUD6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNF135Q8IUD6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 NUDT16P1-203ENST00000513809 620 ntBASIC21.08■□□□□ 0.97
RNF135Q8IUD6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.08■□□□□ 0.97
RNF135Q8IUD6 NAPSB-206ENST00000562112 1266 ntBASIC21.08■□□□□ 0.97
RNF135Q8IUD6 REXO1L10P-201ENST00000615707 1290 ntBASIC21.08■□□□□ 0.97
RNF135Q8IUD6 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
RNF135Q8IUD6 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
RNF135Q8IUD6 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RNF135Q8IUD6 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
RNF135Q8IUD6 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF135Q8IUD6 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 CYP2D8P-201ENST00000433633 1490 ntBASIC21.07■□□□□ 0.96
RNF135Q8IUD6 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF135Q8IUD6 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 SLC25A3P1-201ENST00000443844 931 ntBASIC21.06■□□□□ 0.96
RNF135Q8IUD6 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RNF135Q8IUD6 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 AC116050.2-201ENST00000612102 1779 ntBASIC21.05■□□□□ 0.96
RNF135Q8IUD6 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 TPM4P1-201ENST00000436100 807 ntBASIC21.05■□□□□ 0.96
RNF135Q8IUD6 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 WWOX-216ENST00000569818 525 ntBASIC21.05■□□□□ 0.96
RNF135Q8IUD6 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.05■□□□□ 0.96
RNF135Q8IUD6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms