Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.86
USP54Q70EL1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
USP54Q70EL1 FP700111.2-201ENST00000619190 1892 ntBASIC26.7■■□□□ 1.86
USP54Q70EL1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.7■■□□□ 1.86
USP54Q70EL1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
USP54Q70EL1 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
USP54Q70EL1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
USP54Q70EL1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC26.7■■□□□ 1.86
USP54Q70EL1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
USP54Q70EL1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC26.7■■□□□ 1.86
USP54Q70EL1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
USP54Q70EL1 AC096733.2-201ENST00000609937 1394 ntBASIC26.69■■□□□ 1.86
USP54Q70EL1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP54Q70EL1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP54Q70EL1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP54Q70EL1 RCC2P6-201ENST00000526625 1557 ntBASIC26.69■■□□□ 1.86
USP54Q70EL1 BX119927.1-201ENST00000636596 1552 ntBASIC26.69■■□□□ 1.86
USP54Q70EL1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP54Q70EL1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP54Q70EL1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
USP54Q70EL1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC26.69■■□□□ 1.86
USP54Q70EL1 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC26.69■■□□□ 1.86
USP54Q70EL1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC26.68■■□□□ 1.86
USP54Q70EL1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
USP54Q70EL1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC26.68■■□□□ 1.86
USP54Q70EL1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC26.68■■□□□ 1.86
USP54Q70EL1 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC26.68■■□□□ 1.86
USP54Q70EL1 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 AC011506.1-201ENST00000474329 610 ntBASIC26.68■■□□□ 1.86
USP54Q70EL1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC26.68■■□□□ 1.86
USP54Q70EL1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC26.68■■□□□ 1.86
USP54Q70EL1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC26.68■■□□□ 1.86
USP54Q70EL1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC26.68■■□□□ 1.86
USP54Q70EL1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP54Q70EL1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC26.68■■□□□ 1.86
USP54Q70EL1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP54Q70EL1 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.67■■□□□ 1.86
USP54Q70EL1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP54Q70EL1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC26.67■■□□□ 1.86
USP54Q70EL1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
USP54Q70EL1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP54Q70EL1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USP54Q70EL1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC26.67■■□□□ 1.86
USP54Q70EL1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC26.67■■□□□ 1.86
USP54Q70EL1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC26.67■■□□□ 1.86
USP54Q70EL1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
USP54Q70EL1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC26.67■■□□□ 1.86
USP54Q70EL1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
USP54Q70EL1 AC079834.2-201ENST00000609776 1949 ntBASIC26.67■■□□□ 1.86
USP54Q70EL1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
USP54Q70EL1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC26.66■■□□□ 1.86
USP54Q70EL1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
USP54Q70EL1 NME3-204ENST00000563498 920 ntTSL 2 BASIC26.66■■□□□ 1.86
USP54Q70EL1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
USP54Q70EL1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
USP54Q70EL1 HLA-A-209ENST00000638375 975 ntBASIC26.66■■□□□ 1.86
USP54Q70EL1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC26.66■■□□□ 1.86
USP54Q70EL1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 AC092720.2-201ENST00000602388 1665 ntBASIC26.66■■□□□ 1.86
USP54Q70EL1 AC133561.1-201ENST00000568600 2415 ntBASIC26.66■■□□□ 1.86
USP54Q70EL1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC26.66■■□□□ 1.86
USP54Q70EL1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USP54Q70EL1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC26.66■■□□□ 1.86
USP54Q70EL1 AC006011.2-201ENST00000621313 1158 ntBASIC26.66■■□□□ 1.86
USP54Q70EL1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP54Q70EL1 KRT18P22-201ENST00000402024 1347 ntBASIC26.65■■□□□ 1.86
USP54Q70EL1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
USP54Q70EL1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.65■■□□□ 1.86
USP54Q70EL1 TSPY14P-201ENST00000303979 915 ntBASIC26.65■■□□□ 1.86
USP54Q70EL1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC26.65■■□□□ 1.86
USP54Q70EL1 TUBB8P6-201ENST00000436895 1288 ntBASIC26.65■■□□□ 1.86
USP54Q70EL1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
USP54Q70EL1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP54Q70EL1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC26.65■■□□□ 1.86
USP54Q70EL1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP54Q70EL1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
USP54Q70EL1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP54Q70EL1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC26.64■■□□□ 1.86
USP54Q70EL1 KRT16P6-202ENST00000425692 1426 ntBASIC26.64■■□□□ 1.86
USP54Q70EL1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC26.64■■□□□ 1.86
USP54Q70EL1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
USP54Q70EL1 AL049597.2-201ENST00000565575 961 ntBASIC26.64■■□□□ 1.86
USP54Q70EL1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC26.64■■□□□ 1.86
USP54Q70EL1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
USP54Q70EL1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
USP54Q70EL1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
USP54Q70EL1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.85
USP54Q70EL1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms