Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 AK4P3-201ENST00000418260 669 ntBASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 FAM87A-204ENST00000613235 858 ntBASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CNKSR3Q6P9H4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 AC022616.7-201ENST00000525383 220 ntBASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 LINC01238-205ENST00000567549 1107 ntBASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNKSR3Q6P9H4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 INGX-201ENST00000359239 846 ntBASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNKSR3Q6P9H4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 AC063952.2-201ENST00000498792 1227 ntBASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 SLC25A1P4-201ENST00000567977 778 ntBASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.47■■□□□ 1.03
CNKSR3Q6P9H4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 HMGA1P5-201ENST00000412453 271 ntBASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 AP000692.2-201ENST00000608391 879 ntBASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 AC130371.2-201ENST00000619443 611 ntBASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 KRT16P6-202ENST00000425692 1426 ntBASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CNKSR3Q6P9H4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CNKSR3Q6P9H4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms