Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC23.03■■□□□ 1.28
KRT40Q6A162 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.03■■□□□ 1.28
KRT40Q6A162 MOK-233ENST00000524214 1539 ntTSL 2 BASIC23.03■■□□□ 1.28
KRT40Q6A162 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.02■■□□□ 1.28
KRT40Q6A162 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
KRT40Q6A162 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
KRT40Q6A162 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.02■■□□□ 1.28
KRT40Q6A162 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.02■■□□□ 1.28
KRT40Q6A162 AC142381.4-202ENST00000563973 229 ntBASIC23.02■■□□□ 1.28
KRT40Q6A162 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.02■■□□□ 1.28
KRT40Q6A162 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
KRT40Q6A162 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT40Q6A162 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.27
KRT40Q6A162 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.01■■□□□ 1.27
KRT40Q6A162 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
KRT40Q6A162 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.01■■□□□ 1.27
KRT40Q6A162 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.01■■□□□ 1.27
KRT40Q6A162 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT40Q6A162 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
KRT40Q6A162 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
KRT40Q6A162 TMEM179-206ENST00000616017 1645 ntBASIC23■■□□□ 1.27
KRT40Q6A162 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23■■□□□ 1.27
KRT40Q6A162 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 KRT16P6-202ENST00000425692 1426 ntBASIC23■■□□□ 1.27
KRT40Q6A162 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23■■□□□ 1.27
KRT40Q6A162 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 HLA-G-202ENST00000376815 851 ntBASIC23■■□□□ 1.27
KRT40Q6A162 HLA-G-203ENST00000376818 1127 ntBASIC23■■□□□ 1.27
KRT40Q6A162 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23■■□□□ 1.27
KRT40Q6A162 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23■■□□□ 1.27
KRT40Q6A162 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
KRT40Q6A162 AC091874.3-201ENST00000512672 1195 ntBASIC23■■□□□ 1.27
KRT40Q6A162 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23■■□□□ 1.27
KRT40Q6A162 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23■■□□□ 1.27
KRT40Q6A162 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
KRT40Q6A162 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23■■□□□ 1.27
KRT40Q6A162 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23■■□□□ 1.27
KRT40Q6A162 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC22.99■■□□□ 1.27
KRT40Q6A162 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.99■■□□□ 1.27
KRT40Q6A162 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 AC006058.3-201ENST00000606217 1069 ntBASIC22.99■■□□□ 1.27
KRT40Q6A162 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
KRT40Q6A162 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.99■■□□□ 1.27
KRT40Q6A162 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
KRT40Q6A162 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
KRT40Q6A162 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.99■■□□□ 1.27
KRT40Q6A162 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.99■■□□□ 1.27
KRT40Q6A162 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
KRT40Q6A162 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
KRT40Q6A162 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 MFF-205ENST00000354503 1085 ntTSL 2 BASIC22.98■■□□□ 1.27
KRT40Q6A162 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
KRT40Q6A162 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
KRT40Q6A162 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
KRT40Q6A162 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms