Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14.34□□□□□ -0.11
COL7A1Q02388 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC14.34□□□□□ -0.11
COL7A1Q02388 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC14.33□□□□□ -0.11
COL7A1Q02388 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
COL7A1Q02388 IER3-202ENST00000376377 1350 ntBASIC14.33□□□□□ -0.11
COL7A1Q02388 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC14.33□□□□□ -0.12
COL7A1Q02388 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
COL7A1Q02388 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.33□□□□□ -0.12
COL7A1Q02388 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC14.33□□□□□ -0.12
COL7A1Q02388 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
COL7A1Q02388 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.33□□□□□ -0.12
COL7A1Q02388 DYM-203ENST00000442713 2147 ntTSL 2 BASIC14.33□□□□□ -0.12
COL7A1Q02388 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC14.33□□□□□ -0.12
COL7A1Q02388 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
COL7A1Q02388 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
COL7A1Q02388 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.33□□□□□ -0.12
COL7A1Q02388 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
COL7A1Q02388 CR769767.2-201ENST00000622735 460 ntBASIC14.33□□□□□ -0.12
COL7A1Q02388 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC14.33□□□□□ -0.12
COL7A1Q02388 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL7A1Q02388 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.32□□□□□ -0.12
COL7A1Q02388 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.32□□□□□ -0.12
COL7A1Q02388 AC128688.1-201ENST00000487626 519 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 C1QL1P1-201ENST00000568105 661 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 AL023803.3-201ENST00000615559 522 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 RCC2P6-201ENST00000526625 1557 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.32□□□□□ -0.12
COL7A1Q02388 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.32□□□□□ -0.12
COL7A1Q02388 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.32□□□□□ -0.12
COL7A1Q02388 AL671883.3-201ENST00000603274 991 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL7A1Q02388 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 KRT8P45-201ENST00000414328 1447 ntBASIC14.32□□□□□ -0.12
COL7A1Q02388 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC14.32□□□□□ -0.12
COL7A1Q02388 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC14.32□□□□□ -0.12
COL7A1Q02388 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.32□□□□□ -0.12
COL7A1Q02388 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
COL7A1Q02388 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL7A1Q02388 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.31□□□□□ -0.12
COL7A1Q02388 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL7A1Q02388 AC007663.1-201ENST00000438948 1240 ntBASIC14.31□□□□□ -0.12
COL7A1Q02388 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC14.31□□□□□ -0.12
COL7A1Q02388 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.31□□□□□ -0.12
COL7A1Q02388 KRT8P36-201ENST00000489121 1440 ntBASIC14.31□□□□□ -0.12
COL7A1Q02388 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 AL121603.2-201ENST00000557373 2117 ntBASIC14.31□□□□□ -0.12
COL7A1Q02388 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 KRT17P6-201ENST00000453795 1220 ntBASIC14.31□□□□□ -0.12
COL7A1Q02388 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC14.31□□□□□ -0.12
COL7A1Q02388 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.31□□□□□ -0.12
COL7A1Q02388 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.31□□□□□ -0.12
COL7A1Q02388 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL7A1Q02388 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.31□□□□□ -0.12
COL7A1Q02388 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL7A1Q02388 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC14.31□□□□□ -0.12
COL7A1Q02388 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.31□□□□□ -0.12
COL7A1Q02388 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
COL7A1Q02388 AC011484.1-201ENST00000377652 1995 ntBASIC14.3□□□□□ -0.12
COL7A1Q02388 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC14.3□□□□□ -0.12
COL7A1Q02388 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.3□□□□□ -0.12
COL7A1Q02388 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL7A1Q02388 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.3□□□□□ -0.12
COL7A1Q02388 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms