Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
YBX1P67809 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.4■□□□□ 0.7
YBX1P67809 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.4■□□□□ 0.7
YBX1P67809 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.4■□□□□ 0.7
YBX1P67809 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.4■□□□□ 0.7
YBX1P67809 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.4■□□□□ 0.7
YBX1P67809 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.4■□□□□ 0.7
YBX1P67809 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
YBX1P67809 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
YBX1P67809 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
YBX1P67809 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
YBX1P67809 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
YBX1P67809 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.39■□□□□ 0.7
YBX1P67809 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
YBX1P67809 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
YBX1P67809 RNA5SP413-201ENST00000516373 109 ntBASIC19.39■□□□□ 0.69
YBX1P67809 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
YBX1P67809 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.39■□□□□ 0.69
YBX1P67809 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.39■□□□□ 0.69
YBX1P67809 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
YBX1P67809 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
YBX1P67809 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.38■□□□□ 0.69
YBX1P67809 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.38■□□□□ 0.69
YBX1P67809 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.38■□□□□ 0.69
YBX1P67809 AL020996.1-203ENST00000536896 2307 ntBASIC19.38■□□□□ 0.69
YBX1P67809 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
YBX1P67809 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
YBX1P67809 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.38■□□□□ 0.69
YBX1P67809 MIR4651-201ENST00000582622 73 ntBASIC19.38■□□□□ 0.69
YBX1P67809 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.38■□□□□ 0.69
YBX1P67809 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.38■□□□□ 0.69
YBX1P67809 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.38■□□□□ 0.69
YBX1P67809 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.38■□□□□ 0.69
YBX1P67809 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.37■□□□□ 0.69
YBX1P67809 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
YBX1P67809 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.37■□□□□ 0.69
YBX1P67809 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
YBX1P67809 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.37■□□□□ 0.69
YBX1P67809 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
YBX1P67809 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
YBX1P67809 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.36■□□□□ 0.69
YBX1P67809 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
YBX1P67809 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
YBX1P67809 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
YBX1P67809 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
YBX1P67809 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms