Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.16■□□□□ 0.18
CDX1P47902 AC105036.2-201ENST00000569468 176 ntBASIC16.16■□□□□ 0.18
CDX1P47902 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.16■□□□□ 0.18
CDX1P47902 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.16■□□□□ 0.18
CDX1P47902 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.16■□□□□ 0.18
CDX1P47902 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
CDX1P47902 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CDX1P47902 NOC2LP1-202ENST00000452600 2235 ntBASIC16.15■□□□□ 0.18
CDX1P47902 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.15■□□□□ 0.18
CDX1P47902 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDX1P47902 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDX1P47902 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.15■□□□□ 0.18
CDX1P47902 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDX1P47902 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CDX1P47902 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDX1P47902 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.14■□□□□ 0.18
CDX1P47902 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.14■□□□□ 0.18
CDX1P47902 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CDX1P47902 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.14■□□□□ 0.17
CDX1P47902 AL355802.2-201ENST00000402069 882 ntBASIC16.14■□□□□ 0.17
CDX1P47902 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.14■□□□□ 0.17
CDX1P47902 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.14■□□□□ 0.17
CDX1P47902 AC142086.2-201ENST00000569753 217 ntBASIC16.14■□□□□ 0.17
CDX1P47902 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CDX1P47902 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.14■□□□□ 0.17
CDX1P47902 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDX1P47902 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.14■□□□□ 0.17
CDX1P47902 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.13■□□□□ 0.17
CDX1P47902 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CDX1P47902 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CDX1P47902 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.13■□□□□ 0.17
CDX1P47902 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
CDX1P47902 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CDX1P47902 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.13■□□□□ 0.17
CDX1P47902 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.13■□□□□ 0.17
CDX1P47902 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.13■□□□□ 0.17
CDX1P47902 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CDX1P47902 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.13■□□□□ 0.17
CDX1P47902 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.13■□□□□ 0.17
CDX1P47902 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.13■□□□□ 0.17
CDX1P47902 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CDX1P47902 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDX1P47902 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
CDX1P47902 AC073314.1-201ENST00000568729 2216 ntBASIC16.13■□□□□ 0.17
CDX1P47902 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms