Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.2■□□□□ 0.5
RFC3P40938 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 DPP3P2-201ENST00000416030 1696 ntBASIC18.2■□□□□ 0.5
RFC3P40938 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.2■□□□□ 0.5
RFC3P40938 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.2■□□□□ 0.5
RFC3P40938 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.2■□□□□ 0.5
RFC3P40938 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.2■□□□□ 0.5
RFC3P40938 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 AC133681.1-201ENST00000465482 601 ntBASIC18.2■□□□□ 0.5
RFC3P40938 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.2■□□□□ 0.5
RFC3P40938 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RFC3P40938 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.2■□□□□ 0.5
RFC3P40938 MIR4497-201ENST00000583208 89 ntBASIC18.2■□□□□ 0.5
RFC3P40938 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.2■□□□□ 0.5
RFC3P40938 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.2■□□□□ 0.5
RFC3P40938 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
RFC3P40938 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RFC3P40938 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.2■□□□□ 0.5
RFC3P40938 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.2■□□□□ 0.5
RFC3P40938 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.2■□□□□ 0.5
RFC3P40938 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFC3P40938 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RFC3P40938 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.19■□□□□ 0.5
RFC3P40938 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.19■□□□□ 0.5
RFC3P40938 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.19■□□□□ 0.5
RFC3P40938 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.19■□□□□ 0.5
RFC3P40938 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.19■□□□□ 0.5
RFC3P40938 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.19■□□□□ 0.5
RFC3P40938 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.19■□□□□ 0.5
RFC3P40938 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFC3P40938 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.19■□□□□ 0.5
RFC3P40938 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.19■□□□□ 0.5
RFC3P40938 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.18■□□□□ 0.5
RFC3P40938 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RFC3P40938 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RFC3P40938 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 RPS2P55-201ENST00000397318 883 ntBASIC18.18■□□□□ 0.5
RFC3P40938 TSPY7P-201ENST00000431358 1114 ntBASIC18.18■□□□□ 0.5
RFC3P40938 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 AC107956.1-201ENST00000494359 873 ntBASIC18.18■□□□□ 0.5
RFC3P40938 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
RFC3P40938 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.18■□□□□ 0.5
RFC3P40938 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.18■□□□□ 0.5
RFC3P40938 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.18■□□□□ 0.5
RFC3P40938 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RFC3P40938 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RFC3P40938 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.18■□□□□ 0.5
RFC3P40938 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.18■□□□□ 0.5
RFC3P40938 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFC3P40938 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.17■□□□□ 0.5
RFC3P40938 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.17■□□□□ 0.5
RFC3P40938 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
RFC3P40938 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 HLA-G-202ENST00000376815 851 ntBASIC18.17■□□□□ 0.5
RFC3P40938 HLA-G-203ENST00000376818 1127 ntBASIC18.17■□□□□ 0.5
RFC3P40938 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.17■□□□□ 0.5
RFC3P40938 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.17■□□□□ 0.5
RFC3P40938 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.17■□□□□ 0.5
RFC3P40938 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.17■□□□□ 0.5
RFC3P40938 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFC3P40938 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.17■□□□□ 0.5
RFC3P40938 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RFC3P40938 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RFC3P40938 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms