Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 ID1-201ENST00000376105 1233 ntBASIC15.13■□□□□ 0.01
HLA-DMBP28068 PGM5P4-201ENST00000421970 445 ntBASIC15.13■□□□□ 0.01
HLA-DMBP28068 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 TK2-208ENST00000545043 1120 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.13■□□□□ 0.01
HLA-DMBP28068 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 MDK-213ENST00000617138 635 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 TMEM179-206ENST00000616017 1645 ntBASIC15.13■□□□□ 0.01
HLA-DMBP28068 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 MFSD11-216ENST00000590393 1141 ntBASIC15.12■□□□□ 0.01
HLA-DMBP28068 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HLA-DMBP28068 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DMBP28068 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.12■□□□□ 0.01
HLA-DMBP28068 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AC006970.2-201ENST00000450065 779 ntBASIC15.11■□□□□ 0.01
HLA-DMBP28068 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AC013268.1-206ENST00000638368 961 ntBASIC15.11■□□□□ 0.01
HLA-DMBP28068 AC112229.1-201ENST00000639295 961 ntBASIC15.11■□□□□ 0.01
HLA-DMBP28068 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DMBP28068 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HLA-DMBP28068 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 PBX1-209ENST00000485769 834 ntTSL 2 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 RAP2CP1-201ENST00000605103 478 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms