Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A3P12111 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL6A3P12111 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A3P12111 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.93■□□□□ 0.94
COL6A3P12111 AL590627.1-203ENST00000421194 1026 ntBASIC20.93■□□□□ 0.94
COL6A3P12111 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.93■□□□□ 0.94
COL6A3P12111 HLA-J-202ENST00000469281 1241 ntBASIC20.93■□□□□ 0.94
COL6A3P12111 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A3P12111 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.93■□□□□ 0.94
COL6A3P12111 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A3P12111 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.93■□□□□ 0.94
COL6A3P12111 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A3P12111 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.93■□□□□ 0.94
COL6A3P12111 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A3P12111 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A3P12111 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A3P12111 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A3P12111 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A3P12111 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.93■□□□□ 0.94
COL6A3P12111 IL9RP2-201ENST00000423948 1312 ntBASIC20.92■□□□□ 0.94
COL6A3P12111 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL6A3P12111 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A3P12111 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A3P12111 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
COL6A3P12111 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
COL6A3P12111 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A3P12111 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A3P12111 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.92■□□□□ 0.94
COL6A3P12111 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A3P12111 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.92■□□□□ 0.94
COL6A3P12111 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.92■□□□□ 0.94
COL6A3P12111 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.92■□□□□ 0.94
COL6A3P12111 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A3P12111 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A3P12111 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A3P12111 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
COL6A3P12111 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.91■□□□□ 0.94
COL6A3P12111 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.91■□□□□ 0.94
COL6A3P12111 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.91■□□□□ 0.94
COL6A3P12111 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A3P12111 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A3P12111 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.91■□□□□ 0.94
COL6A3P12111 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.91■□□□□ 0.94
COL6A3P12111 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A3P12111 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 AP002383.4-201ENST00000442518 975 ntBASIC20.9■□□□□ 0.94
COL6A3P12111 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.9■□□□□ 0.94
COL6A3P12111 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
COL6A3P12111 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 MIR564-202ENST00000385049 94 ntBASIC20.9■□□□□ 0.94
COL6A3P12111 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL6A3P12111 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.9■□□□□ 0.94
COL6A3P12111 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A3P12111 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL6A3P12111 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.89■□□□□ 0.94
COL6A3P12111 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.89■□□□□ 0.94
COL6A3P12111 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.89■□□□□ 0.94
COL6A3P12111 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.89■□□□□ 0.94
COL6A3P12111 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.89■□□□□ 0.94
COL6A3P12111 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL6A3P12111 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.89■□□□□ 0.94
COL6A3P12111 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.89■□□□□ 0.93
COL6A3P12111 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 AP000692.2-201ENST00000608391 879 ntBASIC20.89■□□□□ 0.93
COL6A3P12111 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.89■□□□□ 0.93
COL6A3P12111 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.89■□□□□ 0.93
COL6A3P12111 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A3P12111 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.89■□□□□ 0.93
COL6A3P12111 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL6A3P12111 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.89■□□□□ 0.93
COL6A3P12111 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL6A3P12111 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.89■□□□□ 0.93
COL6A3P12111 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.88■□□□□ 0.93
COL6A3P12111 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A3P12111 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
COL6A3P12111 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms