Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
CSB-PGBD3P0DP91 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 PRR31-201ENST00000371629 978 ntTSL 2 BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 CRYGFP-201ENST00000418459 633 ntBASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 EGLN1P1-201ENST00000531623 762 ntBASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CSB-PGBD3P0DP91 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 LGALS8-AS1-201ENST00000487567 1457 ntBASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 AC011506.1-201ENST00000474329 610 ntBASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 AP005242.2-201ENST00000580065 1175 ntBASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC26.44■■□□□ 1.82
CSB-PGBD3P0DP91 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 AC097488.1-201ENST00000507834 756 ntBASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC26.43■■□□□ 1.82
CSB-PGBD3P0DP91 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 TSPY14P-201ENST00000303979 915 ntBASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 DGCR10-201ENST00000609839 495 ntBASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.42■■□□□ 1.82
CSB-PGBD3P0DP91 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC26.41■■□□□ 1.82
CSB-PGBD3P0DP91 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 STK25-204ENST00000405585 1643 ntTSL 2 BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CSB-PGBD3P0DP91 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 AC004980.1-204ENST00000429707 299 ntBASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 AC128688.1-201ENST00000487626 519 ntBASIC26.39■■□□□ 1.82
CSB-PGBD3P0DP91 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms