Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.5■■□□□ 1.51
COL4A1P02462 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC24.5■■□□□ 1.51
COL4A1P02462 TERF1P1-201ENST00000311003 1181 ntBASIC24.5■■□□□ 1.51
COL4A1P02462 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.5■■□□□ 1.51
COL4A1P02462 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
COL4A1P02462 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC24.5■■□□□ 1.51
COL4A1P02462 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC24.5■■□□□ 1.51
COL4A1P02462 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC24.5■■□□□ 1.51
COL4A1P02462 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC24.5■■□□□ 1.51
COL4A1P02462 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC24.5■■□□□ 1.51
COL4A1P02462 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.49■■□□□ 1.51
COL4A1P02462 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC24.49■■□□□ 1.51
COL4A1P02462 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC24.49■■□□□ 1.51
COL4A1P02462 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC24.49■■□□□ 1.51
COL4A1P02462 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.49■■□□□ 1.51
COL4A1P02462 GLDC-219ENST00000640208 420 ntTSL 2 BASIC24.49■■□□□ 1.51
COL4A1P02462 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL4A1P02462 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
COL4A1P02462 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
COL4A1P02462 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.48■■□□□ 1.51
COL4A1P02462 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC24.48■■□□□ 1.51
COL4A1P02462 TFP1-202ENST00000475455 1573 ntBASIC24.48■■□□□ 1.51
COL4A1P02462 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL4A1P02462 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL4A1P02462 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL4A1P02462 FITM1-202ENST00000559294 800 ntBASIC24.48■■□□□ 1.51
COL4A1P02462 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC24.48■■□□□ 1.51
COL4A1P02462 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC24.48■■□□□ 1.51
COL4A1P02462 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
COL4A1P02462 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
COL4A1P02462 AC018553.1-201ENST00000616682 1458 ntBASIC24.48■■□□□ 1.51
COL4A1P02462 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
COL4A1P02462 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC24.48■■□□□ 1.51
COL4A1P02462 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL4A1P02462 YBX1P10-201ENST00000444752 975 ntBASIC24.47■■□□□ 1.51
COL4A1P02462 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL4A1P02462 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL4A1P02462 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL4A1P02462 AC073508.3-201ENST00000619697 1419 ntBASIC24.47■■□□□ 1.51
COL4A1P02462 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL4A1P02462 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL4A1P02462 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC24.46■■□□□ 1.51
COL4A1P02462 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
COL4A1P02462 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
COL4A1P02462 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL4A1P02462 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
COL4A1P02462 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
COL4A1P02462 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
COL4A1P02462 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
COL4A1P02462 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC24.46■■□□□ 1.51
COL4A1P02462 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.46■■□□□ 1.51
COL4A1P02462 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.46■■□□□ 1.51
COL4A1P02462 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.46■■□□□ 1.51
COL4A1P02462 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
COL4A1P02462 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC24.46■■□□□ 1.51
COL4A1P02462 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC24.46■■□□□ 1.51
COL4A1P02462 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC24.46■■□□□ 1.51
COL4A1P02462 AC092865.7-201ENST00000641832 219 ntBASIC24.46■■□□□ 1.51
COL4A1P02462 STK25-204ENST00000405585 1643 ntTSL 2 BASIC24.45■■□□□ 1.5
COL4A1P02462 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC24.45■■□□□ 1.5
COL4A1P02462 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
COL4A1P02462 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.45■■□□□ 1.5
COL4A1P02462 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A1P02462 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A1P02462 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
COL4A1P02462 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
COL4A1P02462 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.45■■□□□ 1.5
COL4A1P02462 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 B3GAT3P1-201ENST00000471720 806 ntBASIC24.44■■□□□ 1.5
COL4A1P02462 AC011506.1-201ENST00000474329 610 ntBASIC24.44■■□□□ 1.5
COL4A1P02462 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC24.44■■□□□ 1.5
COL4A1P02462 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC24.44■■□□□ 1.5
COL4A1P02462 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
COL4A1P02462 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.44■■□□□ 1.5
COL4A1P02462 SMG8-203ENST00000578922 2178 ntBASIC24.44■■□□□ 1.5
COL4A1P02462 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A1P02462 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.44■■□□□ 1.5
COL4A1P02462 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC24.44■■□□□ 1.5
COL4A1P02462 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
COL4A1P02462 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 CRAT-202ENST00000393384 973 ntTSL 2 BASIC24.43■■□□□ 1.5
COL4A1P02462 PPP1R14BP5-201ENST00000440334 435 ntBASIC24.43■■□□□ 1.5
COL4A1P02462 SLC25A3P1-201ENST00000443844 931 ntBASIC24.43■■□□□ 1.5
COL4A1P02462 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC24.43■■□□□ 1.5
COL4A1P02462 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
COL4A1P02462 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms