Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.75■■□□□ 1.07
CLDN3O15551 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.75■■□□□ 1.07
CLDN3O15551 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 AL162377.1-201ENST00000618844 1793 ntBASIC21.75■■□□□ 1.07
CLDN3O15551 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CLDN3O15551 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CLDN3O15551 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.75■■□□□ 1.07
CLDN3O15551 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.75■■□□□ 1.07
CLDN3O15551 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.75■■□□□ 1.07
CLDN3O15551 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.75■■□□□ 1.07
CLDN3O15551 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CLDN3O15551 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.75■■□□□ 1.07
CLDN3O15551 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.75■■□□□ 1.07
CLDN3O15551 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLDN3O15551 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CLDN3O15551 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
CLDN3O15551 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.74■■□□□ 1.07
CLDN3O15551 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.74■■□□□ 1.07
CLDN3O15551 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.74■■□□□ 1.07
CLDN3O15551 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.74■■□□□ 1.07
CLDN3O15551 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.74■■□□□ 1.07
CLDN3O15551 RN7SL471P-201ENST00000580476 299 ntBASIC21.74■■□□□ 1.07
CLDN3O15551 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
CLDN3O15551 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.74■■□□□ 1.07
CLDN3O15551 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.74■■□□□ 1.07
CLDN3O15551 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLDN3O15551 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.74■■□□□ 1.07
CLDN3O15551 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
CLDN3O15551 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CLDN3O15551 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CLDN3O15551 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CLDN3O15551 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.73■■□□□ 1.07
CLDN3O15551 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.73■■□□□ 1.07
CLDN3O15551 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.73■■□□□ 1.07
CLDN3O15551 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.73■■□□□ 1.07
CLDN3O15551 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 MTDHP1-201ENST00000605323 784 ntBASIC21.73■■□□□ 1.07
CLDN3O15551 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CLDN3O15551 BX119927.1-201ENST00000636596 1552 ntBASIC21.73■■□□□ 1.07
CLDN3O15551 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.73■■□□□ 1.07
CLDN3O15551 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLDN3O15551 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CLDN3O15551 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.72■■□□□ 1.07
CLDN3O15551 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.72■■□□□ 1.07
CLDN3O15551 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
CLDN3O15551 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.72■■□□□ 1.07
CLDN3O15551 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.72■■□□□ 1.07
CLDN3O15551 AL121829.2-201ENST00000620908 328 ntBASIC21.72■■□□□ 1.07
CLDN3O15551 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.72■■□□□ 1.07
CLDN3O15551 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLDN3O15551 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CLDN3O15551 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.71■■□□□ 1.07
CLDN3O15551 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 AC098590.1-201ENST00000468126 897 ntBASIC21.71■■□□□ 1.07
CLDN3O15551 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.71■■□□□ 1.07
CLDN3O15551 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CLDN3O15551 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLDN3O15551 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms