Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 HLA-A-201ENST00000376802 1334 ntBASIC15.55■□□□□ 0.08
COL6A5A8TX70 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL6A5A8TX70 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC15.55■□□□□ 0.08
COL6A5A8TX70 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL6A5A8TX70 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL6A5A8TX70 AC020928.2-201ENST00000588717 2197 ntBASIC15.55■□□□□ 0.08
COL6A5A8TX70 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL6A5A8TX70 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL6A5A8TX70 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 AC120114.3-201ENST00000611923 658 ntBASIC15.55■□□□□ 0.08
COL6A5A8TX70 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC15.55■□□□□ 0.08
COL6A5A8TX70 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL6A5A8TX70 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC15.54■□□□□ 0.08
COL6A5A8TX70 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 C1QL1P1-201ENST00000568105 661 ntBASIC15.54■□□□□ 0.08
COL6A5A8TX70 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.54■□□□□ 0.08
COL6A5A8TX70 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 AF228730.7-201ENST00000641842 219 ntBASIC15.54■□□□□ 0.08
COL6A5A8TX70 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL6A5A8TX70 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 MIR574-201ENST00000385209 96 ntBASIC15.54■□□□□ 0.08
COL6A5A8TX70 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.54■□□□□ 0.08
COL6A5A8TX70 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL6A5A8TX70 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL6A5A8TX70 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.54■□□□□ 0.08
COL6A5A8TX70 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 AC092865.5-201ENST00000545435 363 ntBASIC15.53■□□□□ 0.08
COL6A5A8TX70 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
COL6A5A8TX70 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL6A5A8TX70 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 MFAP1P1-201ENST00000442257 1255 ntBASIC15.52■□□□□ 0.08
COL6A5A8TX70 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
COL6A5A8TX70 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL6A5A8TX70 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.52■□□□□ 0.07
COL6A5A8TX70 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A5A8TX70 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
COL6A5A8TX70 AC008040.2-201ENST00000461049 708 ntBASIC15.52■□□□□ 0.07
COL6A5A8TX70 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.52■□□□□ 0.07
COL6A5A8TX70 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
COL6A5A8TX70 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A5A8TX70 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.52■□□□□ 0.07
COL6A5A8TX70 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 MIR1233-2-201ENST00000408138 82 ntBASIC15.51■□□□□ 0.07
COL6A5A8TX70 MIR1233-1-201ENST00000408722 82 ntBASIC15.51■□□□□ 0.07
COL6A5A8TX70 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A5A8TX70 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A5A8TX70 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms