Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.34■□□□□ 0.53
CPSF4LA6NMK7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CPSF4LA6NMK7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.33■□□□□ 0.53
CPSF4LA6NMK7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CPSF4LA6NMK7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.33■□□□□ 0.53
CPSF4LA6NMK7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CPSF4LA6NMK7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CPSF4LA6NMK7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 AC026271.2-201ENST00000428091 497 ntBASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 PTBP1P-201ENST00000554374 1601 ntBASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CPSF4LA6NMK7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CYP2T1P-201ENST00000432607 1285 ntBASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 AC100791.3-201ENST00000617619 330 ntBASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 AC105020.6-201ENST00000621523 1217 ntBASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CPSF4LA6NMK7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 AC006015.1-201ENST00000429970 570 ntBASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 BID-214ENST00000617586 542 ntTSL 5 BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 AC087289.5-201ENST00000586076 3175 ntBASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 KRT8P17-201ENST00000453110 1448 ntBASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CPSF4LA6NMK7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 KRT18P68-201ENST00000392293 1000 ntBASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 AL355472.2-201ENST00000422958 438 ntBASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 AC069236.1-201ENST00000604339 616 ntBASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CPSF4LA6NMK7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPSF4LA6NMK7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms