Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SNORA38B-201ENST00000363524 131 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 RNU4ATAC2P-201ENST00000408674 126 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 RN7SKP188-201ENST00000410789 317 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 GPN3P1-201ENST00000423883 535 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AL512637.1-201ENST00000439523 1231 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 COL11A2P1-205ENST00000441798 676 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 RNU6-362P-201ENST00000516736 90 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 TDGP1-201ENST00000543961 1229 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC016144.1-201ENST00000548175 1087 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC121758.1-202ENST00000556917 658 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 RN7SL199P-201ENST00000578752 281 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 RN7SL656P-201ENST00000579044 281 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 RN7SL404P-201ENST00000582421 281 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC073575.2-201ENST00000614212 627 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC004241.2-201ENST00000614562 444 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 TEX41-255ENST00000626404 610 ntTSL 5 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 FLJ42393-201ENST00000623801 2270 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 Z97989.1-201ENST00000531702 2421 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
HLA-DOAP06340 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
HLA-DOAP06340 PPBPP2-201ENST00000513150 1362 ntBASIC7.97□□□□□ -1.13
HLA-DOAP06340 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 AL136981.1-203ENST00000451452 3844 ntBASIC7.96□□□□□ -1.13
HLA-DOAP06340 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
HLA-DOAP06340 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.13
HLA-DOAP06340 PPIAP24-201ENST00000328558 471 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 OR56A4-201ENST00000330728 1209 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HLA-DOAP06340 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 MIR199B-201ENST00000384849 110 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 RANP6-201ENST00000413691 644 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 AL359885.1-201ENST00000415786 903 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 SEC63P1-201ENST00000425785 1258 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AL365356.3-201ENST00000427341 657 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 RN7SL168P-201ENST00000463821 279 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC012368.3-201ENST00000604190 219 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC005014.3-201ENST00000605985 190 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 AC005828.7-201ENST00000607331 556 ntBASIC7.96□□□□□ -1.14
HLA-DOAP06340 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.14
HLA-DOAP06340 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HLA-DOAP06340 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.14
HLA-DOAP06340 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HLA-DOAP06340 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC7.96□□□□□ -1.14
HLA-DOAP06340 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms