Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CACNA1C-212ENST00000399621 6568 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 CACNA1C-213ENST00000399629 6562 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 CACNA1C-215ENST00000399637 6568 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 CACNA1C-216ENST00000399638 6595 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 CACNA1C-221ENST00000402845 6568 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 PDCD6IP-206ENST00000457054 5962 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.07□□□□□ -1.28
HTTP42858 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.07□□□□□ -1.28
HTTP42858 AL035422.2-201ENST00000603059 565 ntBASIC7.07□□□□□ -1.28
HTTP42858 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 MRO-211ENST00000610511 5257 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 TRPM3-210ENST00000377111 4618 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HTTP42858 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
HTTP42858 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 GOLGA8F-201ENST00000526619 5237 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 MYH10-201ENST00000269243 7662 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 MYH10-203ENST00000379980 7694 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 CACNA1S-202ENST00000367338 5996 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
HTTP42858 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.06□□□□□ -1.28
HTTP42858 EEF1B2P6-201ENST00000445713 673 ntBASIC7.06□□□□□ -1.28
HTTP42858 AC087575.1-201ENST00000585087 229 ntBASIC7.06□□□□□ -1.28
HTTP42858 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 OR8G3P-202ENST00000641572 1255 ntBASIC7.06□□□□□ -1.28
HTTP42858 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 USP13-203ENST00000496897 2747 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 AC021683.2-203ENST00000591283 4902 ntTSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 RNF145-209ENST00000520638 2340 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 PLEC-210ENST00000527096 13713 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
HTTP42858 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 AL133270.1-201ENST00000402635 279 ntBASIC7.06□□□□□ -1.28
HTTP42858 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 AL583856.1-201ENST00000454078 1101 ntBASIC7.06□□□□□ -1.28
HTTP42858 RPS4XP23-201ENST00000487801 237 ntBASIC7.06□□□□□ -1.28
HTTP42858 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.06□□□□□ -1.28
HTTP42858 AL445649.1-201ENST00000615941 691 ntBASIC7.06□□□□□ -1.28
HTTP42858 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 AC073342.3-201ENST00000624211 193 ntBASIC7.06□□□□□ -1.28
HTTP42858 HSBP1-201ENST00000433866 8784 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 RAB3GAP2-202ENST00000358951 7257 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 ESR1-208ENST00000443427 6357 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
HTTP42858 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC7.06□□□□□ -1.28
HTTP42858 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HTTP42858 NLRC5-217ENST00000539144 6505 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
HTTP42858 AL445238.1-204ENST00000400311 463 ntBASIC7.05□□□□□ -1.28
HTTP42858 RN7SKP161-201ENST00000411110 305 ntBASIC7.05□□□□□ -1.28
HTTP42858 AL603650.1-201ENST00000412680 240 ntBASIC7.05□□□□□ -1.28
HTTP42858 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.05□□□□□ -1.28
HTTP42858 GSTA7P-201ENST00000438425 448 ntBASIC7.05□□□□□ -1.28
HTTP42858 RPL12P3-201ENST00000440080 396 ntBASIC7.05□□□□□ -1.28
HTTP42858 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
HTTP42858 AC253576.1-201ENST00000511645 1156 ntBASIC7.05□□□□□ -1.28
HTTP42858 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.05□□□□□ -1.28
HTTP42858 AC021269.1-201ENST00000526860 705 ntBASIC7.05□□□□□ -1.28
HTTP42858 HIGD1AP5-201ENST00000529959 259 ntBASIC7.05□□□□□ -1.28
HTTP42858 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.05□□□□□ -1.28
HTTP42858 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.05□□□□□ -1.28
HTTP42858 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC7.05□□□□□ -1.28
HTTP42858 AC037198.3-201ENST00000616754 526 ntBASIC7.05□□□□□ -1.28
HTTP42858 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
HTTP42858 AP000350.6-201ENST00000609510 5637 ntBASIC7.05□□□□□ -1.28
HTTP42858 AC026362.2-201ENST00000624878 5566 ntBASIC7.05□□□□□ -1.28
HTTP42858 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 DDX46-202ENST00000452510 5689 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 LIN54-202ENST00000442461 4254 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
HTTP42858 HDGFL3-201ENST00000299633 12733 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HTTP42858 AL645927.1-201ENST00000396783 406 ntBASIC7.05□□□□□ -1.28
HTTP42858 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
HTTP42858 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC7.05□□□□□ -1.28
HTTP42858 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.05□□□□□ -1.28
HTTP42858 CYCSP52-201ENST00000422857 310 ntBASIC7.05□□□□□ -1.28
HTTP42858 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.05□□□□□ -1.28
HTTP42858 AC108161.1-201ENST00000461060 402 ntBASIC7.05□□□□□ -1.28
HTTP42858 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms