Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 TTC6-203ENST00000476979 2253 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 FASTKD2-202ENST00000402774 2586 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 NRG3-206ENST00000545131 2713 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 GNAI1-205ENST00000457358 1633 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
MSX1P28360 AC025580.2-204ENST00000560077 2399 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 AC113189.6-201ENST00000636696 3591 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 MASP1-202ENST00000296280 4015 ntAPPRIS P4 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 SERPINB12-201ENST00000269491 1218 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 RETNLB-201ENST00000295755 676 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 RNU6-560P-201ENST00000364007 108 ntBASIC7.82□□□□□ -1.16
MSX1P28360 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 SNORD65C-201ENST00000390962 71 ntBASIC7.82□□□□□ -1.16
MSX1P28360 LINC02449-202ENST00000399866 517 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 NUS1P4-201ENST00000401550 585 ntBASIC7.82□□□□□ -1.16
MSX1P28360 FTH1P10-201ENST00000401830 930 ntBASIC7.82□□□□□ -1.16
MSX1P28360 TMEM139-202ENST00000409102 1226 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 C14orf2-202ENST00000414262 842 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 AKR1B1P8-201ENST00000418396 936 ntBASIC7.82□□□□□ -1.16
MSX1P28360 GRM7-AS2-201ENST00000427748 520 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 PIGCP2-201ENST00000433617 835 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AC034238.2-201ENST00000445660 567 ntTSL 4 BASIC7.82□□□□□ -1.16
MSX1P28360 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 PAXBP1P1-201ENST00000449315 447 ntBASIC7.82□□□□□ -1.16
MSX1P28360 CASK-AS1-201ENST00000451126 515 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 AC069213.3-201ENST00000454858 474 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AL390026.1-201ENST00000456647 457 ntBASIC7.82□□□□□ -1.16
MSX1P28360 RNA5SP269-201ENST00000459032 137 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AC123768.1-202ENST00000460684 461 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 RN7SL434P-201ENST00000495872 271 ntBASIC7.82□□□□□ -1.16
MSX1P28360 PFN2-217ENST00000498307 556 ntTSL 4 BASIC7.82□□□□□ -1.16
MSX1P28360 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 AC073358.1-201ENST00000505671 684 ntBASIC7.82□□□□□ -1.16
MSX1P28360 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 AC079795.1-201ENST00000508847 358 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 SNCA-211ENST00000508895 905 ntAPPRIS P1 TSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 HSPE1P23-201ENST00000509838 286 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AC112192.1-201ENST00000515086 553 ntTSL 4 BASIC7.82□□□□□ -1.16
MSX1P28360 RNU6ATAC39P-201ENST00000516309 149 ntBASIC7.82□□□□□ -1.16
MSX1P28360 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC7.82□□□□□ -1.16
MSX1P28360 AC023644.1-201ENST00000523380 859 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 SMARCE1P4-201ENST00000523647 241 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 AP004245.1-201ENST00000530434 259 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AC025252.2-201ENST00000537470 502 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AC084816.1-211ENST00000540994 485 ntTSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 AL110292.1-202ENST00000552303 568 ntTSL 4 BASIC7.82□□□□□ -1.16
MSX1P28360 COPZ1-215ENST00000552362 575 ntTSL 4 BASIC7.82□□□□□ -1.16
MSX1P28360 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 VN1R65P-201ENST00000566443 808 ntBASIC7.82□□□□□ -1.16
MSX1P28360 AL022154.1-201ENST00000604698 785 ntBASIC7.82□□□□□ -1.16
MSX1P28360 SNCA-212ENST00000611107 297 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 TRBV10-3-201ENST00000611462 368 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
MSX1P28360 DYDC2-207ENST00000616870 1723 ntAPPRIS P3 TSL 3 BASIC7.82□□□□□ -1.16
MSX1P28360 AC243654.1-201ENST00000620218 293 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 LINC01002-219ENST00000632747 621 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 AC009971.1-201ENST00000634253 673 ntTSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 MIPOL1-211ENST00000556451 2282 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 CADPS-220ENST00000613879 1804 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 SNCA-206ENST00000420646 3127 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 MYRFL-205ENST00000552032 3139 ntAPPRIS P2 TSL 5 BASIC7.82□□□□□ -1.16
MSX1P28360 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 NSD2-219ENST00000508803 4251 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 ELF4-202ENST00000335997 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 LINC01347-202ENST00000627498 3841 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 ZNF778-201ENST00000306502 2386 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 C10orf25-201ENST00000625168 3078 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 ZEB2-215ENST00000465070 2949 ntTSL 2 BASIC7.82□□□□□ -1.16
MSX1P28360 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSX1P28360 SLC24A1-203ENST00000399033 3323 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 CNTNAP4-202ENST00000377504 4723 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 FBXW11P1-201ENST00000393804 1474 ntBASIC7.81□□□□□ -1.16
MSX1P28360 RBMS2-204ENST00000550726 1452 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 PGRMC2-202ENST00000394276 2858 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 ABRAXAS1-201ENST00000321945 4291 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 AL390195.2-201ENST00000564771 2023 ntBASIC7.81□□□□□ -1.16
MSX1P28360 KLF5-205ENST00000539231 2951 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 PUM1-203ENST00000373742 3515 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 SETD7-207ENST00000608958 5281 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 SOX9-AS1-217ENST00000623935 1563 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 ERG-205ENST00000398910 4954 ntTSL 5 BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms