Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RPL41P2-201ENST00000544920 409 ntBASIC7□□□□□ -1.29
HMGA1P17096 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC7□□□□□ -1.29
HMGA1P17096 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC7□□□□□ -1.29
HMGA1P17096 AC063977.7-201ENST00000594454 337 ntBASIC7□□□□□ -1.29
HMGA1P17096 AC011891.2-201ENST00000604949 397 ntBASIC7□□□□□ -1.29
HMGA1P17096 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7□□□□□ -1.29
HMGA1P17096 MIR7854-201ENST00000620068 65 ntBASIC7□□□□□ -1.29
HMGA1P17096 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
HMGA1P17096 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HMGA1P17096 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC7□□□□□ -1.29
HMGA1P17096 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7□□□□□ -1.29
HMGA1P17096 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC7□□□□□ -1.29
HMGA1P17096 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HMGA1P17096 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7□□□□□ -1.29
HMGA1P17096 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC7□□□□□ -1.29
HMGA1P17096 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC7□□□□□ -1.29
HMGA1P17096 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HMGA1P17096 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
HMGA1P17096 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7□□□□□ -1.29
HMGA1P17096 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
HMGA1P17096 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.99□□□□□ -1.29
HMGA1P17096 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.99□□□□□ -1.29
HMGA1P17096 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
HMGA1P17096 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HMGA1P17096 SNORA38B-201ENST00000363524 131 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC6.99□□□□□ -1.29
HMGA1P17096 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HMGA1P17096 RN7SKP129-201ENST00000410288 299 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGA1P17096 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGA1P17096 RPS7P12-201ENST00000422385 582 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGA1P17096 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
HMGA1P17096 FTH1P10-202ENST00000430907 550 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 AC010086.1-201ENST00000437359 1052 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 CCNJP1-201ENST00000450600 1149 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGA1P17096 AC236972.4-201ENST00000458091 963 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 RN7SL168P-201ENST00000463821 279 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.99□□□□□ -1.29
HMGA1P17096 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.99□□□□□ -1.29
HMGA1P17096 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGA1P17096 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGA1P17096 AC091768.1-201ENST00000609258 930 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HMGA1P17096 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC6.99□□□□□ -1.29
HMGA1P17096 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HMGA1P17096 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGA1P17096 AC093278.2-201ENST00000564956 2485 ntBASIC6.99□□□□□ -1.29
HMGA1P17096 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
HMGA1P17096 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.98□□□□□ -1.29
HMGA1P17096 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC6.98□□□□□ -1.29
HMGA1P17096 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.98□□□□□ -1.29
HMGA1P17096 RPSAP32-201ENST00000432681 526 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 AL645939.3-201ENST00000435408 225 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.98□□□□□ -1.29
HMGA1P17096 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.98□□□□□ -1.29
HMGA1P17096 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 AL020997.1-201ENST00000446554 349 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.98□□□□□ -1.29
HMGA1P17096 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.98□□□□□ -1.29
HMGA1P17096 AC011352.2-201ENST00000514574 1016 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 AC122713.1-201ENST00000518368 1015 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.98□□□□□ -1.29
HMGA1P17096 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.98□□□□□ -1.29
HMGA1P17096 AP003115.1-201ENST00000569849 463 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.98□□□□□ -1.29
HMGA1P17096 RN7SL270P-201ENST00000579643 281 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HMGA1P17096 AP000577.1-201ENST00000624366 878 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 SNX18P10-201ENST00000625014 519 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 RPSAP68-201ENST00000625020 438 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 AC073488.9-201ENST00000631601 754 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 CASC19-212ENST00000641153 1287 ntBASIC6.98□□□□□ -1.29
HMGA1P17096 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC6.98□□□□□ -1.29
HMGA1P17096 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms