Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.51■□□□□ 0.39
LIME1Q9H400 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.51■□□□□ 0.39
LIME1Q9H400 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.51■□□□□ 0.39
LIME1Q9H400 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LIME1Q9H400 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 AC006128.1-201ENST00000624704 1661 ntBASIC17.51■□□□□ 0.39
LIME1Q9H400 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.51■□□□□ 0.39
LIME1Q9H400 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
LIME1Q9H400 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.5■□□□□ 0.39
LIME1Q9H400 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.5■□□□□ 0.39
LIME1Q9H400 GABARAPL3-202ENST00000624044 1851 ntBASIC17.5■□□□□ 0.39
LIME1Q9H400 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.5■□□□□ 0.39
LIME1Q9H400 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 AL135905.2-201ENST00000584934 1404 ntBASIC17.5■□□□□ 0.39
LIME1Q9H400 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 AL391422.3-201ENST00000603791 2761 ntBASIC17.5■□□□□ 0.39
LIME1Q9H400 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.5■□□□□ 0.39
LIME1Q9H400 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.5■□□□□ 0.39
LIME1Q9H400 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.5■□□□□ 0.39
LIME1Q9H400 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LIME1Q9H400 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIME1Q9H400 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.5■□□□□ 0.39
LIME1Q9H400 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.5■□□□□ 0.39
LIME1Q9H400 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIME1Q9H400 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.49■□□□□ 0.39
LIME1Q9H400 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.49■□□□□ 0.39
LIME1Q9H400 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.49■□□□□ 0.39
LIME1Q9H400 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.49■□□□□ 0.39
LIME1Q9H400 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 TMPOP1-202ENST00000424642 1267 ntBASIC17.49■□□□□ 0.39
LIME1Q9H400 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.49■□□□□ 0.39
LIME1Q9H400 KRT18P35-201ENST00000510488 1269 ntBASIC17.49■□□□□ 0.39
LIME1Q9H400 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.49■□□□□ 0.39
LIME1Q9H400 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.49■□□□□ 0.39
LIME1Q9H400 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 RN7SL850P-201ENST00000579959 291 ntBASIC17.49■□□□□ 0.39
LIME1Q9H400 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.49■□□□□ 0.39
LIME1Q9H400 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
LIME1Q9H400 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
LIME1Q9H400 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIME1Q9H400 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.49■□□□□ 0.39
LIME1Q9H400 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.48■□□□□ 0.39
LIME1Q9H400 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
LIME1Q9H400 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.48■□□□□ 0.39
LIME1Q9H400 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.48■□□□□ 0.39
LIME1Q9H400 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.48■□□□□ 0.39
LIME1Q9H400 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.48■□□□□ 0.39
LIME1Q9H400 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.48■□□□□ 0.39
LIME1Q9H400 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
LIME1Q9H400 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.48■□□□□ 0.39
LIME1Q9H400 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.48■□□□□ 0.39
LIME1Q9H400 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIME1Q9H400 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LIME1Q9H400 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms